Browse Element(s) Details


OsAffx.5879.1.S1_at

Description tigr:9636.m01959
TID=OsAffx.5879.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g199007/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19860NANA8+11894881..11897234hypothetical protein
LOC_Os08g19870OsAffx.29282.1.S1_at11/118+11897989..11900450hAT family dimerisation domain containing protein
LOC_Os08g19880NANA8+11903454..11904650hypothetical protein
LOC_Os08g19890OsAffx.22699.1.S1_x_at2/118+11905151..11913981retrotransposon protein, putative, unclassified
LOC_Os08g19890OsAffx.8201.1.S1_x_at1/118+11905151..11913981retrotransposon protein, putative, unclassified
LOC_Os08g19890OsAffx.18275.1.S1_x_at1/118+11905151..11913981retrotransposon protein, putative, unclassified
LOC_Os08g19890OsAffx.593.1.S1_at1/118+11905151..11913981retrotransposon protein, putative, unclassified
LOC_Os08g19900OsAffx.5879.1.S1_at7/118+11916805..11917791NA
LOC_Os08g19910NANA8+11920580..11921389hypothetical protein
LOC_Os08g19920NANA8+11922819..11926696retrotransposon protein, putative, unclassified
LOC_Os08g19930OsAffx.22240.1.S1_x_at1/118+11928916..11932541retrotransposon protein, putative, unclassified
LOC_Os08g19940NANA8+11933675..11935134hypothetical protein
LOC_Os08g19950NANA8+11935417..11936577hypothetical protein
LOC_Os08g19960OsAffx.5880.1.S1_at11/118+11939868..11940164hypothetical protein
LOC_Os08g19970Os.41695.15.S1_s_at11/118+11942675..11949796Transposable element protein, putative, MuDR
LOC_Os08g19970Os.41695.5.S1_x_at4/118+11942675..11949796Transposable element protein, putative, MuDR
LOC_Os08g19970Os.41695.3.S1_x_at3/118+11942675..11949796Transposable element protein, putative, MuDR
LOC_Os08g19970Os.41695.4.S1_x_at2/118+11942675..11949796Transposable element protein, putative, MuDR
LOC_Os08g19970Os.41695.2.S1_x_at2/118+11942675..11949796Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5879.1.S1_at--86--1811NONE
ACCCCCTCAACGGTGAAGTCATGAT
NONE
OsAffx.5879.1.S1_at--577--2832Chr08:11917150..11917174 (25 bp)
AAGTCATGATTTTTCCAGAGATTCG
LOC_Os08g19900
OsAffx.5879.1.S1_at--12--7131Chr08:11917152..11917176 (25 bp)
GTCATGATTTTTCCAGAGATTCGAT
LOC_Os08g19900
OsAffx.5879.1.S1_at--645--6531Chr08:11917157..11917181 (25 bp)
GATTTTTCCAGAGATTCGATTGTTT
LOC_Os08g19900
OsAffx.5879.1.S1_at--696--10391Chr08:11917160..11917184 (25 bp)
TTTTCCAGAGATTCGATTGTTTAAT
LOC_Os08g19900
OsAffx.5879.1.S1_at--538--4351Chr08:11917164..11917188 (25 bp)
CCAGAGATTCGATTGTTTAATGGGA
LOC_Os08g19900
OsAffx.5879.1.S1_at--1137--6551Chr08:11917169..11917193 (25 bp)
GATTCGATTGTTTAATGGGATTTTA
LOC_Os08g19900
OsAffx.5879.1.S1_at--537--171Chr08:11917188..11917259 (25 bp)
ATTTTAGGATATGTTCGTGGTGCCA
LOC_Os08g19900
OsAffx.5879.1.S1_at--147--10351NONE
TTTAGGATATGTTCGTGGTGCCAGT
NONE
OsAffx.5879.1.S1_at--118--10091NONE
TAGGATATGTTCGTGGTGCCAGTGA
NONE
OsAffx.5879.1.S1_at--484--271NONE
ATATGTTCGTGGTGCCAGTGAGATT
NONE
Target Sequence 
ACCCCCTCAACGGTGAAGTCATGATTTTTCCAGAGATTCGATTGTTTAATGGGATTTTAGGATATGTTCGTGGTGCCAGT
GAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5879.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis