Browse Element(s) Details


OsAffx.5880.1.S1_at

Description tigr:9636.m01965
TID=OsAffx.5880.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1996011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19900OsAffx.5879.1.S1_at7/118+11916805..11917791NA
LOC_Os08g19910NANA8+11920580..11921389hypothetical protein
LOC_Os08g19920NANA8+11922819..11926696retrotransposon protein, putative, unclassified
LOC_Os08g19930OsAffx.22240.1.S1_x_at1/118+11928916..11932541retrotransposon protein, putative, unclassified
LOC_Os08g19940NANA8+11933675..11935134hypothetical protein
LOC_Os08g19950NANA8+11935417..11936577hypothetical protein
LOC_Os08g19960OsAffx.5880.1.S1_at11/118+11939868..11940164hypothetical protein
LOC_Os08g19970Os.41695.15.S1_s_at11/118+11942675..11949796Transposable element protein, putative, MuDR
LOC_Os08g19970Os.41695.5.S1_x_at4/118+11942675..11949796Transposable element protein, putative, MuDR
LOC_Os08g19970Os.41695.3.S1_x_at3/118+11942675..11949796Transposable element protein, putative, MuDR
LOC_Os08g19970Os.41695.4.S1_x_at2/118+11942675..11949796Transposable element protein, putative, MuDR
LOC_Os08g19970Os.41695.2.S1_x_at2/118+11942675..11949796Transposable element protein, putative, MuDR
LOC_Os08g19980Os.21561.1.S1_at11/118+11950320..11959626NB-ARC domain containing protein, expressed
LOC_Os08g19980OsAffx.12953.1.S1_at3/118+11950320..11959626NB-ARC domain containing protein, expressed
LOC_Os08g19990NANA8+11963107..11966134transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5880.1.S1_at--215--7571Chr08:11940102..11940126 (25 bp)
GGGCCCACTTGTGAGCGCTGCTTTT
LOC_Os08g19960
OsAffx.5880.1.S1_at--1108--3311Chr08:11940097..11940121 (25 bp)
CACTTGTGAGCGCTGCTTTTTCTCT
LOC_Os08g19960
OsAffx.5880.1.S1_at--279--10571Chr08:11940065..11940089 (25 bp)
TTCTTTGCATCTCTCGGCGTTCCTC
LOC_Os08g19960
OsAffx.5880.1.S1_at--454--8431Chr08:11940021..11940045 (25 bp)
GGCCTCCTCCTATGCTGGCAACGTC
LOC_Os08g19960
OsAffx.5880.1.S1_at--453--2471Chr08:11939962..11939986 (25 bp)
AACACGGGCGGCCAATGCTTGACCT
LOC_Os08g19960
OsAffx.5880.1.S1_at--334--8351Chr08:11939956..11939980 (25 bp)
GGCGGCCAATGCTTGACCTGGCCAA
LOC_Os08g19960
OsAffx.5880.1.S1_at--542--5831Chr08:11939942..11939966 (25 bp)
GACCTGGCCAAGTTAGAGAGGTTGT
LOC_Os08g19960
OsAffx.5880.1.S1_at--786--10791Chr08:11939921..11939945 (25 bp)
TTGTTGCGGCATGGGAAGGCCGTCA
LOC_Os08g19960
OsAffx.5880.1.S1_at--388--2951Chr08:11939906..11939930 (25 bp)
AAGGCCGTCACGGAGTTGTGCACTG
LOC_Os08g19960
OsAffx.5880.1.S1_at--25--4251Chr08:11939902..11939926 (25 bp)
CCGTCACGGAGTTGTGCACTGGCAA
LOC_Os08g19960
OsAffx.5880.1.S1_at--265--9691Chr08:11939899..11939923 (25 bp)
TCACGGAGTTGTGCACTGGCAAGGA
LOC_Os08g19960
Target Sequence 
GGGCCCACTTGTGAGCGCTGCTTTTTCTCTCTCCCCCTTCTTTGCATCTCTCGGCGTTCCTCCCATGTCAGCGTGCGGCT
CGGCCTCCTCCTATGCTGGCAACGTCCTCGCCTCTCCTCGGGGTGTTGTTGGTCGTCGTCAACACGGGCGGCCAATGCTT
GACCTGGCCAAGTTAGAGAGGTTGTTGCGGCATGGGAAGGCCGTCACGGAGTTGTGCACTGGCAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5880.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis