Browse Element(s) Details


Os.21561.1.S1_at

Description gb:AF456246.1
DB_XREF= gi:22652529
GEN=YR14
TID=Os.21561.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.21561 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) NBS-LRR-like protein (YR14) mRNA, complete cds.
PROD=NBS-LRR-like protein
FL= gb:AK066438.1 gb:AF456246.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1998011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19920NANA8+11922819..11926696retrotransposon protein, putative, unclassified
LOC_Os08g19930OsAffx.22240.1.S1_x_at1/118+11928916..11932541retrotransposon protein, putative, unclassified
LOC_Os08g19940NANA8+11933675..11935134hypothetical protein
LOC_Os08g19950NANA8+11935417..11936577hypothetical protein
LOC_Os08g19960OsAffx.5880.1.S1_at11/118+11939868..11940164hypothetical protein
LOC_Os08g19970Os.41695.15.S1_s_at11/118+11942675..11949796Transposable element protein, putative, MuDR
LOC_Os08g19970Os.41695.5.S1_x_at4/118+11942675..11949796Transposable element protein, putative, MuDR
LOC_Os08g19970Os.41695.3.S1_x_at3/118+11942675..11949796Transposable element protein, putative, MuDR
LOC_Os08g19970Os.41695.4.S1_x_at2/118+11942675..11949796Transposable element protein, putative, MuDR
LOC_Os08g19970Os.41695.2.S1_x_at2/118+11942675..11949796Transposable element protein, putative, MuDR
LOC_Os08g19980Os.21561.1.S1_at11/118+11950320..11959626NB-ARC domain containing protein, expressed
LOC_Os08g19980OsAffx.12953.1.S1_at3/118+11950320..11959626NB-ARC domain containing protein, expressed
LOC_Os08g19990NANA8+11963107..11966134transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g20000Os.50464.1.S1_at11/118+11968350..11975567NB-ARC domain containing protein, expressed
LOC_Os08g20010NANA8+11977108..11977533hypothetical protein
LOC_Os08g20020Os.16067.1.S1_s_at11/118+11978311..11983412PB1 domain containing protein, expressed
LOC_Os08g20020Os.16067.1.S1_at11/118+11978311..11983412PB1 domain containing protein, expressed
LOC_Os08g20020Os.50957.1.S1_at11/118+11978311..11983412PB1 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21561.1.S1_at--718--5691Chr08:11954747..11954771 (25 bp)
GACTACATTCCTGCAAGGCGTTGAC
LOC_Os08g19980
Os.21561.1.S1_at--682--3671Chr08:11954694..11954718 (25 bp)
CTAGGTTCCTTAGAGGGCTTGTCAT
LOC_Os08g19980
Os.21561.1.S1_at--913--3451Chr08:11954652..11954676 (25 bp)
CAGTGTGTTGTCCAAGGATGCCCAA
LOC_Os08g19980
Os.21561.1.S1_at--1051--2411Chr08:11954629..11954653 (25 bp)
AAAACTTCCGTCAGGTTTCATCGCA
LOC_Os08g19980
Os.21561.1.S1_at--862--8531Chr08:11950624..11950648 (25 bp)
TGGACGACCTTGTTTCTGCTGAAAA
LOC_Os08g19980
Os.21561.1.S1_at--966--8271Chr08:11950598..11950622 (25 bp)
GGCATGTTTTAACTTCTGTCAGTGG
LOC_Os08g19980
Os.21561.1.S1_at--393--931Chr08:11950573..11950597 (25 bp)
AGGCAGCTTGGACGCTTACTAGTTC
LOC_Os08g19980
Os.21561.1.S1_at--1078--3871Chr08:11950545..11950569 (25 bp)
CTGTATCGTTGTGGTTTTTGCTGTT
LOC_Os08g19980
Os.21561.1.S1_at--227--10211Chr08:11950440..11950464 (25 bp)
TATTTCGGTAGGCACACCGGCTAAA
LOC_Os08g19980
Os.21561.1.S1_at--859--291Chr08:11950398..11950422 (25 bp)
ATACCATGGGAACACATCTGCCCTT
LOC_Os08g19980
Os.21561.1.S1_at--887--9151Chr08:11950380..11950404 (25 bp)
TGCCCTTCTATGTTACCCAGATAAA
LOC_Os08g19980
Target Sequence 
GACTACATTCCTGCAAGGCGTTGACTATGTTAAGCATCAATGATTGNGAGGCACTAGGTTCCTTAGAGGGCTTGTCATTT
TCTGAAAANCTGAAGCAGTGTGTTGTCCAAGGATGCCCAAAACTTCCGTCAGGTTTCATCGCAAACTGATGATTTGGTGG
CAAACTCTATCAAACTAGCTACCAAAGAAGAGGAGGGAACCGGGATGTGGACGACCTTGTTTCTGCTGAAAAAGGCATGT
TTTAACTTCTGTCAGTGGAGGCAGCTTGGACGCTTACTAGTTCNTGCTGTATCGTTGTGGTTTTTGCTGTTGTATTCACT
ATTATTTTCGTATACTTTATTGTCATTTTATTCACACTACCATATATGGAAATGTTGTGCCTGATGTGTAATATTTCGGT
AGGCACACCGGCTAAAACATTAAATGGTCTTAAATACCATGGGAACACATCTGCCCTTCTATGTTACCCAGATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21561.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis