Browse Element(s) Details


Os.50464.1.S1_at

Description gb:AK121298.1
DB_XREF= gi:37990921
TID=Os.50464.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50464 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) NBS-LRR-like protein (YR36) mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110L09, full insert sequence.
FL= gb:AK121298.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2000011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19970Os.41695.15.S1_s_at11/118+11942675..11949796Transposable element protein, putative, MuDR
LOC_Os08g19970Os.41695.5.S1_x_at4/118+11942675..11949796Transposable element protein, putative, MuDR
LOC_Os08g19970Os.41695.3.S1_x_at3/118+11942675..11949796Transposable element protein, putative, MuDR
LOC_Os08g19970Os.41695.4.S1_x_at2/118+11942675..11949796Transposable element protein, putative, MuDR
LOC_Os08g19970Os.41695.2.S1_x_at2/118+11942675..11949796Transposable element protein, putative, MuDR
LOC_Os08g19980Os.21561.1.S1_at11/118+11950320..11959626NB-ARC domain containing protein, expressed
LOC_Os08g19980OsAffx.12953.1.S1_at3/118+11950320..11959626NB-ARC domain containing protein, expressed
LOC_Os08g19990NANA8+11963107..11966134transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g20000Os.50464.1.S1_at11/118+11968350..11975567NB-ARC domain containing protein, expressed
LOC_Os08g20010NANA8+11977108..11977533hypothetical protein
LOC_Os08g20020Os.16067.1.S1_s_at11/118+11978311..11983412PB1 domain containing protein, expressed
LOC_Os08g20020Os.16067.1.S1_at11/118+11978311..11983412PB1 domain containing protein, expressed
LOC_Os08g20020Os.50957.1.S1_at11/118+11978311..11983412PB1 domain containing protein, expressed
LOC_Os08g20030NANA8+11990346..11996733retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50464.1.S1_at--567--1431Chr08:11974873..11974897 (25 bp)
AGAACTAAACGTACTGTGCCGAGAT
LOC_Os08g20000
Os.50464.1.S1_at--325--3891Chr08:11974886..11974910 (25 bp)
CTGTGCCGAGATATGCTTAGACTTC
LOC_Os08g20000
Os.50464.1.S1_at--151--10111Chr08:11974993..11975017 (25 bp)
TATGTTCGCATATCGTATAGCCTTT
LOC_Os08g20000
Os.50464.1.S1_at--993--6751Chr08:11975007..11975142 (25 bp)
GTATAGCCTTTACACCAGGTTCTTT
LOC_Os08g20000
Os.50464.1.S1_at--371--5971Chr08:11975224..11975248 (25 bp)
GAGAACACCTTCTATTTTCGATGAA
LOC_Os08g20000
Os.50464.1.S1_at--123--2751Chr08:11975355..11975379 (25 bp)
AAGAAGCTACGATTCCGGCTGACAC
LOC_Os08g20000
Os.50464.1.S1_at--1156--9271Chr08:11975368..11975392 (25 bp)
TCCGGCTGACACTCTGGATTTTTTA
LOC_Os08g20000
Os.50464.1.S1_at--591--3371Chr08:11975419..11975443 (25 bp)
CAGCCAAATACTGTTACTGTGGATT
LOC_Os08g20000
Os.50464.1.S1_at--801--3091Chr08:11975452..11975476 (25 bp)
AATACTGTCCAGTTTCAAGTGTTAA
LOC_Os08g20000
Os.50464.1.S1_at--504--5211Chr08:11975519..11975543 (25 bp)
GAATTTTACACGGACATCTACCACT
LOC_Os08g20000
Os.50464.1.S1_at--236--9991Chr08:11975537..11975561 (25 bp)
TACCACTTTATTCATGCCAACCATT
LOC_Os08g20000
Target Sequence 
AGAACTAAACGTACTGTGCCGAGATATGCTTAGACTTCGAAGAAACTTACATTTGTGGGTGGATGGCGACGAGGAGGATT
TCTTTTCACAGAATTGCTCTGACGAAGAAATAAGTNAGCTTATGTTCGCATATCGTATAGCCTTTACACCAGGTTCTTTT
TTGGAAGAACAGAACAATACGAGAACACCTTCTATTTTCGATGAAGGGAGCAAAAGAAACAAAANATCAAAATACAAGAG
AAGAAAAAAGGCTACAGCCTACAGATGAAAGACTATTCTTGGAAGTGTTGAATCTAAATTGCCTACGTAACAAGAAGCTA
CGATTCCGGCTGACACTCTGGATTTTTTAGACAATGGAATCTTTATTATAAGACACAGCCAAATACTGTTACTGTGGATT
GGTGTTGAAATACTGTCCAGTTTCAAGTGTTAAGGAAATAGAGCAGAACTTCAGACATCTTTCCTTTAAATAATGGAATT
TTACACGGACATCTACCACTTTATTCATGCCAACCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50464.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis