Browse Element(s) Details


Os.47130.4.A1_at

Description gb:NM_184811.1
DB_XREF= gi:34896711
GEN=OSJNBa0087M10.24
TID=Os.47130.4
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47130 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative XS domain containing protein (OSJNBa0087M10.24), mRNA.
PROD=putative XS domain containing protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g399409/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39880Os.56311.1.S1_at11/113+22127740..22129574Zinc knuckle family protein, expressed
LOC_Os03g39890NANA3+22129958..22131740retrotransposon, putative, centromere-specific
LOC_Os03g39900OsAffx.10458.1.S1_at11/113+22133882..22138659retrotransposon protein, putative, unclassified
LOC_Os03g39900Os.45088.1.A1_at8/113+22133882..22138659retrotransposon protein, putative, unclassified
LOC_Os03g39910Os.47130.1.S1_at11/113+22138826..22142570XH domain containing protein, expressed
LOC_Os03g39910Os.47130.4.A1_x_at5/113+22138826..22142570XH domain containing protein, expressed
LOC_Os03g39920NANA3+22141835..22147797retrotransposon protein, putative, unclassified
LOC_Os03g39930Os.28943.1.S1_x_at11/113+22148304..22150264retrotransposon protein, putative, unclassified, expressed
LOC_Os03g39930Os.28943.1.S1_at9/113+22148304..22150264retrotransposon protein, putative, unclassified, expressed
LOC_Os03g39940Os.47130.4.A1_at9/113+22152522..22154748retrotransposon protein, putative, unclassified
LOC_Os03g39940Os.47130.4.A1_x_at9/113+22152522..22154748retrotransposon protein, putative, unclassified
LOC_Os03g39950OsAffx.22690.1.S1_at10/113+22158332..22158834hypothetical protein
LOC_Os03g39960Os.32194.2.S1_x_at11/113+22158657..22161827expressed protein
LOC_Os03g39960Os.32194.1.S1_at11/113+22158657..22161827expressed protein
LOC_Os03g39970OsAffx.22691.1.S1_at10/113+22165511..22167507hypothetical protein
LOC_Os03g39980OsAffx.25443.1.S1_at11/113+22168202..22169035expressed protein
LOC_Os03g40000Os.22924.1.S1_at10/113+22170865..22172779expressed protein
LOC_Os03g40010Os.11763.1.S1_at10/113+22173892..22181813expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47130.4.A1_at--636--2251NONE
AAATATAATAGAACTGCAGCAGCAT
NONE
Os.47130.4.A1_at--256--3391Chr03:22153634..22153658 (25 bp)
CAGCAGCATGCTTGCAAAGATTCAA
LOC_Os03g39940
Os.47130.4.A1_at--86--4831Chr03:22153565..22153589 (25 bp)
GCTAAGAAACATGAAATTGACCGGA
LOC_Os03g39940
Os.47130.4.A1_at--206--9771Chr03:22153536..22153560 (25 bp)
TAAGGAACTTAATTATTTGGCTACA
LOC_Os03g39940
Os.47130.4.A1_at--517--8311Chr03:22153518..22153542 (25 bp)
GGCTACAAATACTAATATTGACAGA
LOC_Os03g39940
Os.47130.4.A1_at--21--5651Chr03:22153499..22153523 (25 bp)
GACAGAGGAAAACTCGTAGCAGAGA
LOC_Os03g39940
Os.47130.4.A1_at--1071--8031Chr03:22153362..22153386 (25 bp)
GGAGAATGAGCTTCTTAATTTAGCA
LOC_Os03g39940
Os.47130.4.A1_at--823--5911Chr03:22153355..22153379 (25 bp)
GAGCTTCTTAATTTAGCAAATCTAA
LOC_Os03g39940
Os.47130.4.A1_at--464--671Chr03:22153315..22153339 (25 bp)
ATGAAGAGCTTTTGCGGCTTGTTGA
LOC_Os03g39940
Os.47130.4.A1_at--1159--1551Chr03:22153309..22153333 (25 bp)
AGCTTTTGCGGCTTGTTGAGAAACA
LOC_Os03g39940
Os.47130.4.A1_at--1115--2452Chr07:21936475..21936954 (25 bp)
AACACAAGCCGGAAATGACCTCTGA
NONE
Target Sequence 
AAATATAATAGAACTGCAGCAGCATGCTTGCAAAGATTCAAAGAGAATAATTGATGAAAACCTAAANCTGTATGAAGAAC
TNCAGGCTAAGAAACATGAAATTGACCGGAGNTGTAAGGAACTTAATTATTTGGCTACAAATACTAATATTGACAGAGGA
AAACTCGTAGCAGAGAAAGAAAAGAATGCAAAGGAGAATGAGCTTCTTAATTTAGCAAATCTAAAGCAGAAGGAGGCAGA
TGAAGAGCTTTTGCGGCTTGTTGAGAAACACAAGCCGGAAATGACCTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47130.4.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis