Browse Element(s) Details


OsAffx.22690.1.S1_at

Description tigr:9631.m03843
TID=OsAffx.22690.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3995010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39900OsAffx.10458.1.S1_at11/113+22133882..22138659retrotransposon protein, putative, unclassified
LOC_Os03g39900Os.45088.1.A1_at8/113+22133882..22138659retrotransposon protein, putative, unclassified
LOC_Os03g39910Os.47130.1.S1_at11/113+22138826..22142570XH domain containing protein, expressed
LOC_Os03g39910Os.47130.4.A1_x_at5/113+22138826..22142570XH domain containing protein, expressed
LOC_Os03g39920NANA3+22141835..22147797retrotransposon protein, putative, unclassified
LOC_Os03g39930Os.28943.1.S1_x_at11/113+22148304..22150264retrotransposon protein, putative, unclassified, expressed
LOC_Os03g39930Os.28943.1.S1_at9/113+22148304..22150264retrotransposon protein, putative, unclassified, expressed
LOC_Os03g39940Os.47130.4.A1_at9/113+22152522..22154748retrotransposon protein, putative, unclassified
LOC_Os03g39940Os.47130.4.A1_x_at9/113+22152522..22154748retrotransposon protein, putative, unclassified
LOC_Os03g39950OsAffx.22690.1.S1_at10/113+22158332..22158834hypothetical protein
LOC_Os03g39960Os.32194.2.S1_x_at11/113+22158657..22161827expressed protein
LOC_Os03g39960Os.32194.1.S1_at11/113+22158657..22161827expressed protein
LOC_Os03g39970OsAffx.22691.1.S1_at10/113+22165511..22167507hypothetical protein
LOC_Os03g39980OsAffx.25443.1.S1_at11/113+22168202..22169035expressed protein
LOC_Os03g40000Os.22924.1.S1_at10/113+22170865..22172779expressed protein
LOC_Os03g40010Os.11763.1.S1_at10/113+22173892..22181813expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22690.1.S1_at--100--7511Chr03:22158777..22158801 (25 bp)
GTGGTTGTGCGTCGTTCTTCAGTAC
LOC_Os03g39950
OsAffx.22690.1.S1_at--714--7211NONE
GTCGTTCTTCAGTACGGCAGAGGAA
NONE
OsAffx.22690.1.S1_at--448--6611Chr03:22158619..22158643 (25 bp)
GATTGGGCAGCAGATTTTCCTCGCT
LOC_Os03g39950
OsAffx.22690.1.S1_at--14--10391Chr03:22158605..22158629 (25 bp)
TTTTCCTCGCTCAGCCATAGAAGGG
LOC_Os03g39950
OsAffx.22690.1.S1_at--174--1091Chr03:22158584..22158608 (25 bp)
AGGGCTAGGAGGAACCCTATCCAAG
LOC_Os03g39950
OsAffx.22690.1.S1_at--1008--3691Chr03:22158568..22158592 (25 bp)
CTATCCAAGGAGACGGCAGCAATGT
LOC_Os03g39950
OsAffx.22690.1.S1_at--773--1931Chr03:22158556..22158580 (25 bp)
ACGGCAGCAATGTCACGCAGGGTGA
LOC_Os03g39950
OsAffx.22690.1.S1_at--234--9691Chr03:22158544..22158568 (25 bp)
TCACGCAGGGTGACGGCTCTCTTCG
LOC_Os03g39950
OsAffx.22690.1.S1_at--309--7631Chr03:22158519..22158543 (25 bp)
GGGACAGAGCAGCAAGATCTAAACT
LOC_Os03g39950
OsAffx.22690.1.S1_at--149--2011Chr03:22158497..22158521 (25 bp)
ACTCTCTGGAACAAAGATCTCACCA
LOC_Os03g39950
OsAffx.22690.1.S1_at--558--6411Chr03:22158482..22158506 (25 bp)
GATCTCACCATCTTCCAACGAGGGA
LOC_Os03g39950
Target Sequence 
GTGGTTGTGCGTCGTTCTTCAGTACGGCAGAGGAAATTTGAAAAAACCAAGCGTGATTGGGCAGCAGATTTTCCTCGCTC
AGCCATAGAAGGGCTAGGAGGAACCCTATCCAAGGAGACGGCAGCAATGTCACGCAGGGTGACGGCTCTCTTCGGGGACA
GAGCAGCAAGATCTAAACTCTCTGGAACAAAGATCTCACCATCTTCCAACGAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22690.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis