Browse Element(s) Details


OsAffx.25443.1.S1_at

Description gb:NM_184807.1
DB_XREF= gi:34896703
TID=OsAffx.25443.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0087M10.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3998011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39920NANA3+22141835..22147797retrotransposon protein, putative, unclassified
LOC_Os03g39930Os.28943.1.S1_x_at11/113+22148304..22150264retrotransposon protein, putative, unclassified, expressed
LOC_Os03g39930Os.28943.1.S1_at9/113+22148304..22150264retrotransposon protein, putative, unclassified, expressed
LOC_Os03g39940Os.47130.4.A1_at9/113+22152522..22154748retrotransposon protein, putative, unclassified
LOC_Os03g39940Os.47130.4.A1_x_at9/113+22152522..22154748retrotransposon protein, putative, unclassified
LOC_Os03g39950OsAffx.22690.1.S1_at10/113+22158332..22158834hypothetical protein
LOC_Os03g39960Os.32194.2.S1_x_at11/113+22158657..22161827expressed protein
LOC_Os03g39960Os.32194.1.S1_at11/113+22158657..22161827expressed protein
LOC_Os03g39970OsAffx.22691.1.S1_at10/113+22165511..22167507hypothetical protein
LOC_Os03g39980OsAffx.25443.1.S1_at11/113+22168202..22169035expressed protein
LOC_Os03g40000Os.22924.1.S1_at10/113+22170865..22172779expressed protein
LOC_Os03g40010Os.11763.1.S1_at10/113+22173892..22181813expressed protein
LOC_Os03g40014NANA3+22185106..22186086NA
LOC_Os03g40020Os.45095.1.S1_at11/113+22187895..22193521DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os03g40020Os.53366.1.S1_x_at4/113+22187895..22193521DEAD/DEAH box helicase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25443.1.S1_at--1055--5091Chr03:22168463..22168487 (25 bp)
GCACTGGGCAGCTTTGTCATGAGCA
LOC_Os03g39980
OsAffx.25443.1.S1_at--770--9691Chr03:22168584..22168608 (25 bp)
TCACAGCCTGTGGACACACTGGTGT
LOC_Os03g39980
OsAffx.25443.1.S1_at--245--7851Chr03:22168645..22168669 (25 bp)
GGTAGAGCCATCTTCTGCCACTGAA
LOC_Os03g39980
OsAffx.25443.1.S1_at--974--9191Chr03:22168660..22168684 (25 bp)
TGCCACTGAATCTTGTGTCCCTGAT
LOC_Os03g39980
OsAffx.25443.1.S1_at--563--8831Chr03:22168681..22168705 (25 bp)
TGATCATTCAGAAGCTCCTTACCGC
LOC_Os03g39980
OsAffx.25443.1.S1_at--471--10471Chr03:22168699..22168723 (25 bp)
TTACCGCGACAACGATGACGCATCG
LOC_Os03g39980
OsAffx.25443.1.S1_at--978--8931Chr03:22168714..22168738 (25 bp)
TGACGCATCGGAGGATTGCTCTCAT
LOC_Os03g39980
OsAffx.25443.1.S1_at--1140--10011Chr03:22168833..22168857 (25 bp)
TAGCAATGCCGTCGCAACCGGAGTT
LOC_Os03g39980
OsAffx.25443.1.S1_at--1024--1771Chr03:22168849..22168873 (25 bp)
ACCGGAGTTCTTCAGGCTCGATGAA
LOC_Os03g39980
OsAffx.25443.1.S1_at--669--7131Chr03:22168880..22168904 (25 bp)
GTCATCTTGGAGAGTGCTGTCGTCA
LOC_Os03g39980
OsAffx.25443.1.S1_at--732--4731Chr03:22168895..22168919 (25 bp)
GCTGTCGTCAAGGAACCATCGTGTG
LOC_Os03g39980
Target Sequence 
GCACTGGGCAGCTTTGTCATGAGCAAGAAGGCGCTGTTCGTACTCTCCAACGCCATCTTCCTCTTCCTCGCCGCCGATTA
CTACCGCTGCTTCTTCAGCTTATCCCCATCCACAAGTGATTTCACAGCCTGTGGACACACTGGTGTAGGAGACAAACAAG
AACAGCATCATCATCAGGTTGGGGTAGAGCCATCTTCTGCCACTGAATCTTGTGTCCCTGATCATTCAGAAGCTCCTTAC
CGCGACAACGATGACGCATCGGAGGATTGCTCTCATGGTGAAAGAATGGATGGTGAAGGAAGCAGGAGAAATATTGTGAG
AACACCTGATGATGAAATGCCATCAGGGGAACAGAAGGCTCATGGAGATATAGCAATGCCGTCGCAACCGGAGTTCTTCA
GGCTCGATGAAGATGACGTCATCTTGGAGAGTGCTGTCGTCAAGGAACCATCGTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25443.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis