Browse Element(s) Details


OsAffx.8121.1.S1_at

Description tigr:9638.m02404
TID=OsAffx.8121.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2839011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28340Os.10942.1.S1_a_at11/1110+14416706..14420777HSF-type DNA-binding domain containing protein, expressed
LOC_Os10g28350Os.4766.1.S1_at10/1110+14422575..144249281,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os10g28360Os.34459.1.S1_at11/1110+14427730..144303661,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os10g28370OsAffx.30569.1.S1_x_at11/1110+14434249..14435588Chlorophyllase family protein, expressed
LOC_Os10g28380OsAffx.30570.1.S1_at11/1110+14438455..14439908hypothetical protein
LOC_Os10g28380OsAffx.20341.1.S1_x_at1/1110+14438455..14439908hypothetical protein
LOC_Os10g28390OsAffx.8121.1.S1_at11/1110+14443524..14443784hypothetical protein
LOC_Os10g28400OsAffx.20341.1.S1_x_at10/1110+14444352..14446444expressed protein
LOC_Os10g28400OsAffx.20341.1.S1_at9/1110+14444352..14446444expressed protein
LOC_Os10g28410Os.37540.1.S1_x_at11/1110+14447026..14449651expressed protein
LOC_Os10g28410Os.37540.2.S1_at10/1110+14447026..14449651expressed protein
LOC_Os10g28420OsAffx.6794.1.S1_x_at11/1110+14455720..14457261IQ calmodulin-binding motif family protein, expressed
LOC_Os10g28420OsAffx.25518.1.S1_x_at1/1110+14455720..14457261IQ calmodulin-binding motif family protein, expressed
LOC_Os10g28430OsAffx.6795.1.S1_at11/1110+14460764..14461213hypothetical protein
LOC_Os10g28440Os.46851.1.S1_x_at11/1110+14468747..14470955Sulfate transporter 3.1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8121.1.S1_at--341--1851Chr10:14443556..14443580 (25 bp)
ACGAAAGAGGAGCACGATGACAACT
LOC_Os10g28390
OsAffx.8121.1.S1_at--343--1331Chr10:14443561..14443585 (25 bp)
AGAGGAGCACGATGACAACTAGGAC
LOC_Os10g28390
OsAffx.8121.1.S1_at--858--5931Chr10:14443565..14443589 (25 bp)
GAGCACGATGACAACTAGGACGCCC
LOC_Os10g28390
OsAffx.8121.1.S1_at--122--1891Chr10:14443569..14443593 (25 bp)
ACGATGACAACTAGGACGCCCCTTC
LOC_Os10g28390
OsAffx.8121.1.S1_at--126--10651Chr10:14443591..14443615 (25 bp)
TTCCCCATGCGCCTGCGGTACTTGG
LOC_Os10g28390
OsAffx.8121.1.S1_at--194--611Chr10:14443597..14443621 (25 bp)
ATGCGCCTGCGGTACTTGGCGACGA
LOC_Os10g28390
OsAffx.8121.1.S1_at--797--4271Chr10:14443602..14443626 (25 bp)
CCTGCGGTACTTGGCGACGAAGCCG
LOC_Os10g28390
OsAffx.8121.1.S1_at--8--3991Chr10:14443638..14443662 (25 bp)
CGGGATCCGACGACGCGAAAGAAGA
LOC_Os10g28390
OsAffx.8121.1.S1_at--881--6111Chr10:14443664..14443688 (25 bp)
GAGTGGAGGGCGTTGTGACAGAGGA
LOC_Os10g28390
OsAffx.8121.1.S1_at--42--7391Chr10:14443690..14443714 (25 bp)
GTGAGGACAGGGTTGCCAGCTCCCT
LOC_Os10g28390
OsAffx.8121.1.S1_at--939--5651Chr10:14443695..14443719 (25 bp)
GACAGGGTTGCCAGCTCCCTTCGCT
LOC_Os10g28390
Target Sequence 
ACGAAAGAGGAGCACGATGACAACTAGGACGCCCCTTCCCCATGCGCCTGCGGTACTTGGCGACGAAGCCGGCAAGCGGG
TGCGGGATCCGACGACGCGAAAGAAGATGAGTGGAGGGCGTTGTGACAGAGGAGGTGAGGACAGGGTTGCCAGCTCCCTT
CGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8121.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis