Browse Element(s) Details


OsAffx.30569.1.S1_x_at

Description tigr:9638.m02402
TID=OsAffx.30569.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2837011/11Chlorophyllase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28330OsAffx.30568.1.S1_at11/1110+14410500..14413348Zinc finger, C2H2 type family protein
LOC_Os10g28340Os.10942.1.S1_a_at11/1110+14416706..14420777HSF-type DNA-binding domain containing protein, expressed
LOC_Os10g28350Os.4766.1.S1_at10/1110+14422575..144249281,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os10g28360Os.34459.1.S1_at11/1110+14427730..144303661,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os10g28370OsAffx.30569.1.S1_x_at11/1110+14434249..14435588Chlorophyllase family protein, expressed
LOC_Os10g28380OsAffx.30570.1.S1_at11/1110+14438455..14439908hypothetical protein
LOC_Os10g28380OsAffx.20341.1.S1_x_at1/1110+14438455..14439908hypothetical protein
LOC_Os10g28390OsAffx.8121.1.S1_at11/1110+14443524..14443784hypothetical protein
LOC_Os10g28400OsAffx.20341.1.S1_x_at10/1110+14444352..14446444expressed protein
LOC_Os10g28400OsAffx.20341.1.S1_at9/1110+14444352..14446444expressed protein
LOC_Os10g28410Os.37540.1.S1_x_at11/1110+14447026..14449651expressed protein
LOC_Os10g28410Os.37540.2.S1_at10/1110+14447026..14449651expressed protein
LOC_Os10g28420OsAffx.6794.1.S1_x_at11/1110+14455720..14457261IQ calmodulin-binding motif family protein, expressed
LOC_Os10g28420OsAffx.25518.1.S1_x_at1/1110+14455720..14457261IQ calmodulin-binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0015996biological_processchlorophyll catabolism
GO:0009507cellular_componentchloroplast
GO:0047746molecular_functionchlorophyllase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30569.1.S1_x_at--8--5191Chr10:14434799..14434823 (25 bp)
GCAAGGTGGCGTTCGCGCTGGCGCT
LOC_Os10g28370
OsAffx.30569.1.S1_x_at--446--7751Chr10:14434618..14434642 (25 bp)
GGTGATGGTCATCGGCACGGGCCTC
LOC_Os10g28370
OsAffx.30569.1.S1_x_at--974--7271Chr10:14434501..14434525 (25 bp)
GTGCCACCTGGTGGCGAGGGACTAC
LOC_Os10g28370
OsAffx.30569.1.S1_x_at--846--1071Chr10:14434485..14434509 (25 bp)
AGGGACTACGGCCACACCGACATGA
LOC_Os10g28370
OsAffx.30569.1.S1_x_at--231--2031Chr10:14434481..14434505 (25 bp)
ACTACGGCCACACCGACATGATGGA
LOC_Os10g28370
OsAffx.30569.1.S1_x_at--117--2111Chr10:14434466..14434490 (25 bp)
ACATGATGGACGACGTGACGCCCGG
LOC_Os10g28370
OsAffx.30569.1.S1_x_at--322--4611Chr10:14434428..14434452 (25 bp)
GCGACGCGCGCCGTGTGCAGGAGCG
LOC_Os10g28370
OsAffx.30569.1.S1_x_at--1050--4331Chr10:14434397..14434421 (25 bp)
CCAGGGCGCCCATGCGGCGGTTCTT
LOC_Os10g28370
OsAffx.30569.1.S1_x_at--329--3511Chr10:14434363..14434387 (25 bp)
CATGGTCGCGTTCGTGAAGAGGTGG
LOC_Os10g28370
OsAffx.30569.1.S1_x_at--859--1671Chr10:14434328..14434352 (25 bp)
AGCCGGAGCTCCTGGACTGCGTCAG
LOC_Os10g28370
OsAffx.30569.1.S1_x_at--683--8531Chr10:14434316..14434340 (25 bp)
TGGACTGCGTCAGGGCGCGGCCGGA
LOC_Os10g28370
Target Sequence 
GCAAGGTGGCGTTCGCGCTGGCGCTGGGCCACGCCAACGTCTCCCTCCGGGGCGGCGCCGGCGGCGCCACCATCGCCGCC
CTCGTCGCCGTCGACCCCGTGGACGGCTTCGCCGCCGGGAAGCAGACGCCGCCGCCGATCCTCACCTACGGCGGCGCCAA
CTCCCTGCGCGTGCCGGCGCCGGTGATGGTCATCGGCACGGGCCTCGGCGGCCTCGCCCGGGCGGCGCCGCTGCTCCCGG
CGTGCGCGCCGCCCGGGGTGAGCCACGGCGAGTTCTACGGCGAGTGCGCGGCGCCGGCGTGCCACCTGGTGGCGAGGGAC
TACGGCCACACCGACATGATGGACGACGTGACGCCCGGGGCCAGGGGCCTCGCGACGCGCGCCGTGTGCAGGAGCGGCGG
CGCCAGGGCGCCCATGCGGCGGTTCTTCGGCGGCGCCATGGTCGCGTTCGTGAAGAGGTGGGTGGAAGGGGAGCCGGAGC
TCCTGGACTGCGTCAGGGCGCGGCCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30569.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis