Browse Element(s) Details


Os.10942.1.S1_a_at

Description gb:AY344488.1
DB_XREF= gi:33591105
TID=Os.10942.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10942 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) heat shock factor RHSF6 mRNA, complete cds.
PROD=heat shock factor RHSF6
FL= gb:AY344488.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2834011/11HSF-type DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28310NANA10+14396428..14401263retrotransposon protein, putative, unclassified
LOC_Os10g28320Os.38371.1.S1_a_at10/1110+14402113..14407215Auxin-induced protein PCNT115, putative, expressed
LOC_Os10g28330OsAffx.30568.1.S1_at11/1110+14410500..14413348Zinc finger, C2H2 type family protein
LOC_Os10g28340Os.10942.1.S1_a_at11/1110+14416706..14420777HSF-type DNA-binding domain containing protein, expressed
LOC_Os10g28350Os.4766.1.S1_at10/1110+14422575..144249281,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os10g28360Os.34459.1.S1_at11/1110+14427730..144303661,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os10g28370OsAffx.30569.1.S1_x_at11/1110+14434249..14435588Chlorophyllase family protein, expressed
LOC_Os10g28380OsAffx.30570.1.S1_at11/1110+14438455..14439908hypothetical protein
LOC_Os10g28380OsAffx.20341.1.S1_x_at1/1110+14438455..14439908hypothetical protein
LOC_Os10g28390OsAffx.8121.1.S1_at11/1110+14443524..14443784hypothetical protein
LOC_Os10g28400OsAffx.20341.1.S1_x_at10/1110+14444352..14446444expressed protein
LOC_Os10g28400OsAffx.20341.1.S1_at9/1110+14444352..14446444expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10942.1.S1_a_at--30--5271Chr10:14417984..14418008 (25 bp)
GAAGGCGGCCTATAGACAATGTTCC
LOC_Os10g28340
Os.10942.1.S1_a_at--404--3191Chr10:14417968..14417992 (25 bp)
CAATGTTCCATTCTATGACCCTGGG
LOC_Os10g28340
Os.10942.1.S1_a_at--245--5731Chr10:14417932..14417956 (25 bp)
GACTGAGCAACTTGATTCGCCGTAT
LOC_Os10g28340
Os.10942.1.S1_a_at--1107--6571Chr10:14417919..14417943 (25 bp)
GATTCGCCGTATTTGTTTGATTCAG
LOC_Os10g28340
Os.10942.1.S1_a_at--1054--9751Chr10:14417879..14417903 (25 bp)
TAAGTGAACCTGGAATCCCTGAGCT
LOC_Os10g28340
Os.10942.1.S1_a_at--256--551Chr10:14417865..14417889 (25 bp)
ATCCCTGAGCTGGAGAATCTCGCAG
LOC_Os10g28340
Os.10942.1.S1_a_at--181--1371Chr10:14417773..14417797 (25 bp)
AGAGCTCGGAGATGACTTCTGGGCA
LOC_Os10g28340
Os.10942.1.S1_a_at--1010--8931Chr10:14417689..14417713 (25 bp)
TGACGGCATCGACGAACTGGCTCAA
LOC_Os10g28340
Os.10942.1.S1_a_at--19--7691Chr10:14417658..14417682 (25 bp)
GGGTATCTGAGCTCTACTAGTCCAA
LOC_Os10g28340
Os.10942.1.S1_a_at--490--8791Chr10:14417613..14417637 (25 bp)
TGTTCATCCAACAACTACTGCTGCT
LOC_Os10g28340
Os.10942.1.S1_a_at--443--3731Chr10:14417599..14417623 (25 bp)
CTACTGCTGCTTCAGTGCTTTTGAA
LOC_Os10g28340
Target Sequence 
GAAGGCGGCCTATAGACAATGTTCCATTCTATGACCCTGGGGAAACAAGTCAGACTGAGCAACTTGATTCGCCGTATTTG
TTTGATTCAGGTGTGCTTAATGAGTTAAGTGAACCTGGAATCCCTGAGCTGGAGAATCTCGCAGTGAACATTCAGGATCT
GGGGAAGGGTAAAGTAGATGAAGAGAGGCAGAATCAAACTAATGGTCAGGCAGAGCTCGGAGATGACTTCTGGGCAGAGC
TGTTGGTTGAAGATTTCACAGGCAAGGAGGAGCAGTCAGAGTTGGATGGCAAAATTGACGGCATCGACGAACTGGCTCAA
CAGTTGGGGTATCTGAGCTCTACTAGTCCAAAATAGAGTTGATTTTGTGATTGTTCATCCAACAACTACTGCTGCTTCAG
TGCTTTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10942.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis