Browse Element(s) Details


Os.38371.1.S1_a_at

Description gb:AK064344.1
DB_XREF= gi:32974362
TID=Os.38371.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.38371 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative polyprotein (OSJNBa0006I13.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-H09, full insert sequence.
FL= gb:AK099316.1 gb:AK064344.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2832010/11Auxin-induced protein PCNT115, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28280OsAffx.6790.1.S1_at11/1110+14378077..14380116hypothetical protein
LOC_Os10g28280Os.50619.1.S1_at1/1110+14378077..14380116hypothetical protein
LOC_Os10g28280Os.50619.1.S1_x_at1/1110+14378077..14380116hypothetical protein
LOC_Os10g28290OsAffx.8122.1.S1_at10/1110+14381545..14383708expressed protein
LOC_Os10g28310NANA10+14396428..14401263retrotransposon protein, putative, unclassified
LOC_Os10g28320Os.38371.1.S1_a_at10/1110+14402113..14407215Auxin-induced protein PCNT115, putative, expressed
LOC_Os10g28330OsAffx.30568.1.S1_at11/1110+14410500..14413348Zinc finger, C2H2 type family protein
LOC_Os10g28340Os.10942.1.S1_a_at11/1110+14416706..14420777HSF-type DNA-binding domain containing protein, expressed
LOC_Os10g28350Os.4766.1.S1_at10/1110+14422575..144249281,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os10g28360Os.34459.1.S1_at11/1110+14427730..144303661,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009744biological_processresponse to sucrose stimulus
GO:0003700molecular_functiontranscription factor activity
GO:0004033molecular_functionaldo-keto reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38371.1.S1_a_at--95--9131Chr10:14404808..14404832 (25 bp)
TGCTGTACAGAGCATACCATCTGAG
LOC_Os10g28320
Os.38371.1.S1_a_at--621--1731Chr10:14404823..14404963 (25 bp)
ACCATCTGAGAGTTGGCTGACTAGA
LOC_Os10g28320
Os.38371.1.S1_a_at--671--8331Chr10:14404957..14404977 (21 bp)
GGCTGACTAGACATCCAAGGTACAA
LOC_Os10g28320
Os.38371.1.S1_a_at--213--9851Chr10:14405009..14405033 (25 bp)
TACACACGAATTGAAGAGCTTGCCA
LOC_Os10g28320
Os.38371.1.S1_a_at--1118--5911Chr10:14405024..14405048 (25 bp)
GAGCTTGCCACCAAGTATGGCTGCT
LOC_Os10g28320
Os.38371.1.S1_a_at--106--10731Chr10:14405061..14405085 (25 bp)
TTGCTCTCTCCTGGGTTCTTCATCA
LOC_Os10g28320
Os.38371.1.S1_a_at--433--6691NONE
GTTCCAATCCCTGGCACAACAAAAG
NONE
Os.38371.1.S1_a_at--1157--4311Chr10:14406823..14406847 (25 bp)
CCTTGATGATAACATTGGTGCTGTA
LOC_Os10g28320
Os.38371.1.S1_a_at--542--4071Chr10:14406904..14406928 (25 bp)
CGAGGTGGCTGGGTCCAGACTTATT
LOC_Os10g28320
Os.38371.1.S1_a_at--878--5691Chr10:14406921..14406945 (25 bp)
GACTTATTGGAGTACTGGAGCCTTA
LOC_Os10g28320
Os.38371.1.S1_a_at--1062--1931Chr10:14406934..14406958 (25 bp)
ACTGGAGCCTTATTCTTGGAGGGTT
LOC_Os10g28320
Target Sequence 
TGCTGTACAGAGCATACCATCTGAGAGTTGGCTGACTAGACATCCAAGGTACAATGGGGAAAACTTGGAGAAGAATAAAG
TTTTCTACACACGAATTGAAGAGCTTGCCACCAAGTATGGCTGCTCCCCTGCTCAACTTGCTCTCTCCTGGGTTCTTCAT
CAAGGGGATGATGTTGTTCCAATCCCTGGCACAACAAAAGTGAAGAACCTTGATGATAACATTGGTGCTGTAAAGGTAAA
GCTGAGCAAGGAAGACCTGAAAGAAATCTCAGCTGCTGTCCCTGCTGGCGAGGTGGCTGGGTCCAGACTTATTGGAGTAC
TGGAGCCTTATTCTTGGAGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38371.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis