Browse Element(s) Details


OsAffx.17631.1.S1_at

Description tigr:9637.m00786
TID=OsAffx.17631.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1028011/11hypothetical protein
LOC_Os07g382801/11Insulinase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10240NANA9+5575424..5582937retrotransposon protein, putative, unclassified
LOC_Os09g10250NANA9+5584021..5584287hypothetical protein
LOC_Os09g10260Os.55370.1.S1_at3/119+5586916..5587413SKP1-like protein 1A, putative
LOC_Os09g10270OsAffx.29787.1.S1_at11/119+5593786..5594304SKP1-like protein 1A, putative
LOC_Os09g10280OsAffx.17631.1.S1_at11/119+5600227..5601061hypothetical protein
LOC_Os09g10290NANA9+5604607..5606833retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g10300Os.53132.1.S1_at11/119+5609377..5610032Skp1 family, dimerisation domain containing protein, expressed
LOC_Os09g10310NANA9+5619905..5621325retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10320OsAffx.29788.1.S1_x_at11/119+5623093..5623416retrotransposon protein, putative, unclassified
LOC_Os09g10330OsAffx.6223.1.S1_at11/119+5624475..5625305hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17631.1.S1_at--745--2932Chr11:2086259..2086278 (20 bp)
AAGGCACAGCCCACTAGCAGTCGGG
NONE
OsAffx.17631.1.S1_at--398--4552Chr09:5600815..5600839 (25 bp)
GCCCATCGTGCCTTTTTTGAAATAA
LOC_Os09g10280
OsAffx.17631.1.S1_at--756--9711Chr09:5600782..5600806 (25 bp)
TACGTTCCTATTCTTTGGGTTGTGC
LOC_Os09g10280
OsAffx.17631.1.S1_at--944--10294Chr09:1242916..1242935 (20 bp)
TTTCCTCTCTATTCTTTGTTTCGCA
NONE
OsAffx.17631.1.S1_at--1162--10633Chr09:5600721..5600745 (25 bp)
TTCGCATCCCTGAACTTTGTGCTGA
LOC_Os09g10280
OsAffx.17631.1.S1_at--978--4631Chr09:5600692..5600716 (25 bp)
GCGTACCGAGGTAGCAGCCAGGCAC
LOC_Os09g10280
OsAffx.17631.1.S1_at--44--8951Chr09:5600606..5600630 (25 bp)
TGACTCTATGGCCATCTACAGCGCT
LOC_Os09g10280
OsAffx.17631.1.S1_at--734--9851Chr09:5600590..5600614 (25 bp)
TACAGCGCTGGCACCAAGCTAAAAA
LOC_Os09g10280
OsAffx.17631.1.S1_at--774--9811Chr09:5600363..5600595 (25 bp)
TAAAAACTGGAGTCGTCCCTGTCCT
LOC_Os09g10280
OsAffx.17631.1.S1_at--1132--9551Chr09:5600324..5600348 (25 bp)
TCATTTTCCACAACCGTCTAACAAG
LOC_Os09g10280
OsAffx.17631.1.S1_at--695--5351Chr09:5600269..5600293 (25 bp)
GAAGATGAACTATGGCCACGGACAT
LOC_Os09g10280
Target Sequence 
AAGGCACAGCCCACTAGCAGTCGGGCCGTGCCGTGCCGGCCCGAAGGCACGGGCGGCCCATCGTGCCTTTTTTGAAATAA
GTCTATTTTACGTTCCTATTCTTTGGGTTGTGCCATATAATACGTTTATTTTTCCTCTCTATTCTTTGTTTCGCATCCCT
GAACTTTGTGCTGACCCAGCGTACCGAGGTAGCAGCCAGGCACGGCACGGCTGTCGGGCCAGGCCGTGCCTAGGCCGGAC
CAAATCACCAGGCCATCGGGCCTCTGACTCTATGGCCATCTACAGCGCTGGCACCAAGCTAAAAACTGGAGTCGTCCCTG
TCCTGACAGTGCACTCTGTCATTTTCCACAACCGTCTAACAAGGATAAATCCGGCAGATGATGAGATGAAGAGGAAGATG
AACTATGGCCACGGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17631.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis