Browse Element(s) Details


Os.17076.1.S1_at

Description gb:AK064764.1
DB_XREF= gi:32974782
TID=Os.17076.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17076 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-H08, full insert sequence.
FL= gb:AK064764.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1034010/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10310NANA9+5619905..5621325retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10320OsAffx.29788.1.S1_x_at11/119+5623093..5623416retrotransposon protein, putative, unclassified
LOC_Os09g10330OsAffx.6223.1.S1_at11/119+5624475..5625305hypothetical protein
LOC_Os09g10340Os.17076.1.S1_at10/119+5642295..5644523Cytochrome P450 family protein, expressed
LOC_Os09g10350NANA9+5654552..5656370Transposable element protein, putative, MuDR
LOC_Os09g10360NANA9+5656883..5660134hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17076.1.S1_at--34--2531Chr09:5642789..5642813 (25 bp)
AACTATGAGTTCATCCCTTTCGGCT
LOC_Os09g10340
Os.17076.1.S1_at--118--10111Chr09:5642735..5642759 (25 bp)
TATGGCCTCGCAAGCATGGAGCTCA
LOC_Os09g10340
Os.17076.1.S1_at--964--831Chr09:5642720..5642744 (25 bp)
ATGGAGCTCATGTTTACGGGTCTTC
LOC_Os09g10340
Os.17076.1.S1_at--273--731Chr09:5642711..5642735 (25 bp)
ATGTTTACGGGTCTTCTCTACCACT
LOC_Os09g10340
Os.17076.1.S1_at--605--3891Chr09:5642543..5642567 (25 bp)
CTGTGTTGCATGTTTCAGCGCAACC
LOC_Os09g10340
Os.17076.1.S1_at--427--3491NONE
CATGTTTCAGCGCAACCAAAGTAAA
NONE
Os.17076.1.S1_at--312--10371Chr09:5642419..5642443 (25 bp)
TTTTTATTTCAATTATGGCCTGACC
LOC_Os09g10340
Os.17076.1.S1_at--1156--3971Chr09:5642393..5642417 (25 bp)
CGGTGTGTGTATATATCTCCATCTA
LOC_Os09g10340
Os.17076.1.S1_at--748--10191Chr09:5642384..5642408 (25 bp)
TATATATCTCCATCTACCTATGCCA
LOC_Os09g10340
Os.17076.1.S1_at--318--1571Chr09:5642340..5642364 (25 bp)
AGCTAGTCTGTATGATTTAATATCC
LOC_Os09g10340
Os.17076.1.S1_at--1023--2951Chr09:5642298..5642322 (25 bp)
GAATGGGAATTTCAATTAGTCGTTA
LOC_Os09g10340
Target Sequence 
AACTATGAGTTCATCCCTTTCGGCTCTGGCCGGAGGATGTGCCCCGNTTTCAACTATGGCCTCGCAAGCATGGAGCTCAT
GTTTACGGGTCTTCTCTACCACTTCGACTGGTCGCTACCGGAGGGTGTAAATGAGGTGGACATGGCGGAGGCGCCAGGCC
TCGGGGTTCNCCGCCGCTCGCCACTGATGCTGTGCGCCACCCCGTTTGTCCCTGTGGTCTCTGCCNATTAGTTCCATCTA
TGCATGCTGTGTTGCATGTTTCAGCGCAACCAAAGTAAAATGAAGATACTCCCTCATTCTATAATATAANTGTCTTATAT
TTTCGTATGGAGGGAGTAATACGTACGTTTACGTAGTAATATGCATGTGCATTTTTATTTCAATTATGGCCTGACCNCGG
TGTGTGTATATATCTCCATCTACCTATGCCACGTTTATATTGTATCTCAAGCTAGTCTGTATGATTTAATATCCATCTGG
ATTTGAAGTAAGAATGGGAATTTCAATTAGTCGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis