Browse Element(s) Details


Os.13759.1.S1_at

Description gb:BI797707
DB_XREF= gi:15849431
DB_XREF=H084G06
CLONE=H084G06
TID=Os.13759.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.13759 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g276702/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27610NANA4+16138342..16141674retrotransposon protein, putative, unclassified
LOC_Os04g27620OsAffx.26186.1.S1_at11/114+16142192..16144680expressed protein
LOC_Os04g27630OsAffx.15592.1.S1_at2/114+16144998..16150985retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g27630Os.31497.2.S1_x_at1/114+16144998..16150985retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g27640NANA4+16151597..16153096hypothetical protein
LOC_Os04g27650NANA4+16153819..16155199hypothetical protein
LOC_Os04g27660NANA4+16160656..16161851retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g27670OsAffx.3920.1.S1_s_at11/114+16162540..16166198Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27670OsAffx.3920.1.S1_at11/114+16162540..16166198Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27670Os.13759.1.S1_at2/114+16162540..16166198Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27680NANA4+16176033..16178979retrotransposon protein, putative, unclassified
LOC_Os04g27690OsAffx.14002.1.S1_at11/114+16183698..16184229hypothetical protein
LOC_Os04g27700OsAffx.26189.1.S1_at11/114+16184756..16185282expressed protein
LOC_Os04g27700OsAffx.29788.1.S1_x_at2/114+16184756..16185282expressed protein
LOC_Os04g27700OsAffx.21269.1.S1_x_at1/114+16184756..16185282expressed protein
LOC_Os04g27710NANA4+16188132..16191789retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016106biological_processsesquiterpenoid biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13759.1.S1_at--739--6711Chr04:16164339..16164363 (25 bp)
GTTCTGAAGTTCGTGTCAATATTTT
LOC_Os04g27670
Os.13759.1.S1_at--100--5131Chr04:16164281..16164301 (21 bp)
GCAAATAATGTATCCTAGCATGCTA
LOC_Os04g27670
Os.13759.1.S1_at--692--9251NONE
TCCTAGCATGCTAATTCTCATCAAA
NONE
Os.13759.1.S1_at--102--3171NONE
AATTCCAGATGGGACAAAGCCTATT
NONE
Os.13759.1.S1_at--218--5631NONE
GACAAAGCCTATTTCTATTTTCCCG
NONE
Os.13759.1.S1_at--551--10771NONE
TTGAGGAGTTTGACCACCAGTGTCC
NONE
Os.13759.1.S1_at--1057--8031NONE
GGAGTTTGACCACCAGTGTCCGACA
NONE
Os.13759.1.S1_at--1029--7431NONE
GTGTCCGACACGAAAAATACCAGGT
NONE
Os.13759.1.S1_at--817--7871NONE
GGTTACTTACACCAACCAGAGGTAG
NONE
Os.13759.1.S1_at--908--6151NONE
GAGGTAGAACCATCCAATATCTCTA
NONE
Os.13759.1.S1_at--267--5431NONE
GAACCATCCAATATCTCTATGGGAA
NONE
Target Sequence 
GTTCTGAAGTTCGTGTCAATATTTTAATTCATAAGAAAGAAATATTGGATGGAACATAGTGCAAATAATGTATCCTAGCA
TGCTAATTCTCATCAAACTAATTCCAGATGGGACAAAGCCTATTTCTATTTTCCCGGAGTACCTGAAAAAGTTCTATATT
AAATTGCTAATCAACTTTGAGGAGTTTGACCACCAGTGTCCGACACGAAAAATACCAGGTTACTTACACCAACCAGAGGT
AGAACCATCCAATATCTCTATGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13759.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis