Browse Element(s) Details


OsAffx.3920.1.S1_s_at

Description tigr:9632.m02608
TID=OsAffx.3920.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Terpene synthase family, metal binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2767011/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27610NANA4+16138342..16141674retrotransposon protein, putative, unclassified
LOC_Os04g27620OsAffx.26186.1.S1_at11/114+16142192..16144680expressed protein
LOC_Os04g27630OsAffx.15592.1.S1_at2/114+16144998..16150985retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g27630Os.31497.2.S1_x_at1/114+16144998..16150985retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g27640NANA4+16151597..16153096hypothetical protein
LOC_Os04g27650NANA4+16153819..16155199hypothetical protein
LOC_Os04g27660NANA4+16160656..16161851retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g27670OsAffx.3920.1.S1_s_at11/114+16162540..16166198Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27670OsAffx.3920.1.S1_at11/114+16162540..16166198Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27670Os.13759.1.S1_at2/114+16162540..16166198Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27680NANA4+16176033..16178979retrotransposon protein, putative, unclassified
LOC_Os04g27690OsAffx.14002.1.S1_at11/114+16183698..16184229hypothetical protein
LOC_Os04g27700OsAffx.26189.1.S1_at11/114+16184756..16185282expressed protein
LOC_Os04g27700OsAffx.29788.1.S1_x_at2/114+16184756..16185282expressed protein
LOC_Os04g27700OsAffx.21269.1.S1_x_at1/114+16184756..16185282expressed protein
LOC_Os04g27710NANA4+16188132..16191789retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016106biological_processsesquiterpenoid biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3920.1.S1_s_at--297--10111Chr04:16162995..16163019 (25 bp)
TATGGTACTCTTCTACGATGACAGG
LOC_Os04g27670
OsAffx.3920.1.S1_s_at--611--2171Chr04:16162960..16162984 (25 bp)
ACACATTTGCCACACTTCTTAGGGA
LOC_Os04g27670
OsAffx.3920.1.S1_s_at--250--7891Chr04:16162887..16162911 (25 bp)
GGTTAACTTTCTAGCCAATGTGGCA
LOC_Os04g27670
OsAffx.3920.1.S1_s_at--894--2971Chr04:16162871..16162895 (25 bp)
AATGTGGCAATCCATCTGCATGTAT
LOC_Os04g27670
OsAffx.3920.1.S1_s_at--783--4891Chr04:16162831..16162855 (25 bp)
GCTTTTGGCTTCTGTTATTCATGTT
LOC_Os04g27670
OsAffx.3920.1.S1_s_at--68--4851Chr04:16162790..16162814 (25 bp)
GCTAAGCTACTTAATCTGCATGTGT
LOC_Os04g27670
OsAffx.3920.1.S1_s_at--939--10251Chr04:16162760..16162784 (25 bp)
TTTGAGTCTGTATGCGTGAGCCCAC
LOC_Os04g27670
OsAffx.3920.1.S1_s_at--60--311Chr04:16162724..16162748 (25 bp)
ATAGCCATCGCGAGGAGTCAGTTGT
LOC_Os04g27670
OsAffx.3920.1.S1_s_at--593--4651Chr04:16162671..16162695 (25 bp)
GCGTCGTGCGCCGAATTCAAAGACA
LOC_Os04g27670
OsAffx.3920.1.S1_s_at--697--1271Chr04:16162616..16162640 (25 bp)
AGATCACGGCGGCAGAATCGGTCCT
LOC_Os04g27670
OsAffx.3920.1.S1_s_at--564--491Chr04:16162600..16162624 (25 bp)
ATCGGTCCTGGTGGTTGTATTTCCA
LOC_Os04g27670
Target Sequence 
TATGGTACTCTTCTACGATGACAGGAATGATGCCTACACATTTGCCACACTTCTTAGGGAGATTATAGAGTCTCTCTTCG
TGAGGCCTGCTCCCATCTAGACCTTAATGGTTAACTTTCTAGCCAATGTGGCAATCCATCTGCATGTATACTTGTATTGA
ATATGCTTTTGGCTTCTGTTATTCATGTTAACAATAAACTTGTGTGCTAAGCTACTTAATCTGCATGTGTTTCATTTTGA
GTCTGTATGCGTGAGCCCACGATCTATGTGGATAGCCATCGCGAGGAGTCAGTTGTGAGGGCATCCGAGGCTAGCTCGCT
GTCCGCGTCGTGCGCCGAATTCAAAGACACGTCGTGTGGCTGTGGGGATGGACGCAGCTAGATCACGGCGGCAGAATCGG
TCCTGGTGGTTGTATTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3920.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis