Browse Element(s) Details


OsAffx.26190.1.S1_at

Description tigr:9632.m02613
TID=OsAffx.26190.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Terpene synthase family, metal binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2772011/11Terpene synthase, N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27680NANA4+16176033..16178979retrotransposon protein, putative, unclassified
LOC_Os04g27690OsAffx.14002.1.S1_at11/114+16183698..16184229hypothetical protein
LOC_Os04g27700OsAffx.26189.1.S1_at11/114+16184756..16185282expressed protein
LOC_Os04g27700OsAffx.29788.1.S1_x_at2/114+16184756..16185282expressed protein
LOC_Os04g27700OsAffx.21269.1.S1_x_at1/114+16184756..16185282expressed protein
LOC_Os04g27710NANA4+16188132..16191789retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g27720OsAffx.26190.1.S1_at11/114+16192873..16197397Terpene synthase, N-terminal domain containing protein
LOC_Os04g27730OsAffx.31892.1.S1_x_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.5.S1_x_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.5.S1_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.2.S1_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.2.S1_x_at2/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.32289.1.S1_at1/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.7216.1.S1_at1/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27730OsAffx.31892.3.S1_at1/114+16199210..16206492transposon protein, putative, Mutator sub-class
LOC_Os04g27740OsAffx.14003.1.S1_at10/114+16210272..16211412hypothetical protein
LOC_Os04g27750NANA4+16214751..16215310expressed protein
LOC_Os04g27760NANA4+16220057..16223444Terpene synthase family, metal binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0016099biological_processmonoterpenoid biosynthesis
GO:0016106biological_processsesquiterpenoid biosynthesis
GO:0046246biological_processterpene biosynthesis
GO:0042408molecular_functionmyrcene/(E)-beta-ocimene synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26190.1.S1_at--1032--5351Chr04:16193763..16193783 (21 bp)
GAAGAGTTTCAAAAGCAGTCCACTT
LOC_Os04g27720
OsAffx.26190.1.S1_at--819--1131Chr04:16193747..16193771 (25 bp)
AGTCCACTTATTATCTGCAAGAAGC
LOC_Os04g27720
OsAffx.26190.1.S1_at--440--3031Chr04:16193663..16193687 (25 bp)
AATCCTCAGCTGTGCAATTATTGTG
LOC_Os04g27720
OsAffx.26190.1.S1_at--1160--91Chr04:16193593..16193617 (25 bp)
ATTCGAGTGGGTAGCTAGTGGCAAC
LOC_Os04g27720
OsAffx.26190.1.S1_at--254--2611Chr04:16193571..16193595 (25 bp)
AACGCTGCAGTCATAGCATGTGCTA
LOC_Os04g27720
OsAffx.26190.1.S1_at--400--771Chr04:16193554..16193578 (25 bp)
ATGTGCTAAGATTGGGCGTTTCATG
LOC_Os04g27720
OsAffx.26190.1.S1_at--784--9771Chr04:16193128..16193152 (25 bp)
TAAGAGAGATGTCGCGAGCTCCGTA
LOC_Os04g27720
OsAffx.26190.1.S1_at--999--7371Chr04:16193072..16193096 (25 bp)
GTGAGGCTGCCTTTGCGAAGATTAA
LOC_Os04g27720
OsAffx.26190.1.S1_at--132--5691Chr04:16193006..16193030 (25 bp)
GACTTGAGCATCGTACACTGCTACC
LOC_Os04g27720
OsAffx.26190.1.S1_at--545--8971Chr04:16192964..16192988 (25 bp)
TGAACTTTACCGTTTCCATGGCACT
LOC_Os04g27720
OsAffx.26190.1.S1_at--546--5311Chr04:16192924..16192948 (25 bp)
GAAGGATGCATACACATTTGGCACA
LOC_Os04g27720
Target Sequence 
GAAGAGTTTCAAAAGCAGTCCACTTATTATCTGCAAGAAGCTGAATGGTCGAACCAGAAATACAAGCCTGGCTTCAAAGA
CCAGGTGGTTTTGTCTACCAAATCCTCAGCTGTGCAATTATTGTGTGTGGCTGCTATGGTTGGCTGGGGTGGGACAATGA
CGACAGAAGCATTCGAGTGGGTAGCTAGTGGCAACGCTGCAGTCATAGCATGTGCTAAGATTGGGCGTTTCATGAATGAT
ATTGCTGCATTTAAGCGTGGAAAGAATAAGAGAGATGTCGCGAGCTCCGTAGAGTGCTACATGAATGAGAATGGGGTCAC
AAGTGAGGCTGCCTTTGCGAAGATTAATGCACTAGTCGAAGACGAATGGAGATCCACGAACCAGACCCGACTTGAGCATC
GTACACTGCTACCCATGGTGCAGCGAATTGTGAACTTTACCGTTTCCATGGCACTCTTCTACGATGACAAGAAGGATGCA
TACACATTTGGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26190.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis