Browse Element(s) Details


Os.11829.1.S1_at

Description gb:AK110594.1
DB_XREF= gi:32995803
TID=Os.11829.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11829 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-168-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-F10, full insert sequence.
FL= gb:AK120275.1 gb:AK110594.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2592010/11hypothetical protein
LOC_Os04g278003/11expressed protein
LOC_Os11g418703/11Sugar transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25880OsAffx.23396.1.S1_s_at11/111+14661787..14665907dephospho-CoA kinase family protein, expressed
LOC_Os01g25880Os.23667.1.A1_at11/111+14661787..14665907dephospho-CoA kinase family protein, expressed
LOC_Os01g25880Os.57362.1.S1_at1/111+14661787..14665907dephospho-CoA kinase family protein, expressed
LOC_Os01g25880OsAffx.23396.1.S1_at1/111+14661787..14665907dephospho-CoA kinase family protein, expressed
LOC_Os01g25890NANA1+14673295..14675091retrotransposon protein, putative, unclassified
LOC_Os01g25900NANA1+14675717..14678851retrotransposon protein, putative, unclassified
LOC_Os01g25910OsAffx.19678.1.S1_at10/111+14682241..14684550hypothetical protein
LOC_Os01g25910OsAffx.13774.1.S1_at1/111+14682241..14684550hypothetical protein
LOC_Os01g25910OsAffx.11264.1.S1_s_at1/111+14682241..14684550hypothetical protein
LOC_Os01g25910Os.27004.1.A1_at1/111+14682241..14684550hypothetical protein
LOC_Os01g25920Os.11829.1.S2_at11/111+14685138..14688095hypothetical protein
LOC_Os01g25920Os.11829.1.S1_at10/111+14685138..14688095hypothetical protein
LOC_Os01g25920Os.38368.1.S1_s_at1/111+14685138..14688095hypothetical protein
LOC_Os01g25920OsAffx.18868.5.S1_x_at1/111+14685138..14688095hypothetical protein
LOC_Os01g25920Os.11706.1.S1_x_at1/111+14685138..14688095hypothetical protein
LOC_Os01g25930NANA1+14690301..14691545transposon protein, putative, unclassified
LOC_Os01g25940NANA1+14695953..14696432hypothetical protein
LOC_Os01g25950Os.53142.1.S1_at3/111+14698069..14700868retrotransposon protein, putative, unclassified
LOC_Os01g25960OsAffx.27924.1.S1_at2/111+14703918..14707124retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25960OsAffx.26951.1.S1_at1/111+14703918..14707124retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25970NANA1+14708286..14709464retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25980NANA1+14711545..14712117retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25990Os.5375.1.S1_at11/111+14712629..14720895esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g25990OsAffx.31138.1.S1_x_at2/111+14712629..14720895esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g25990Os.54405.1.S1_at1/111+14712629..14720895esterase/lipase/thioesterase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0005354molecular_functiongalactose transporter activity
GO:0005355molecular_functionglucose transporter activity
GO:0005365molecular_functionmyo-inositol transporter activity
GO:0005403molecular_functionhydrogen:sugar symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
GO:0015148molecular_functionD-xylose transporter activity
GO:0015168molecular_functionglycerol transporter activity
GO:0015575molecular_functionmannitol transporter activity
GO:0015591molecular_functionD-ribose transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11829.1.S1_at--726--1852Chr05:20401444..20401463 (20 bp)
ACGACAGCTACAGTGGCTGCAACGA
NONE
Os.11829.1.S1_at--12--9471Chr01:14687946..14687970 (25 bp)
TCTGGGTGAGGGTAACATCTCCCTT
LOC_Os01g25920
Os.11829.1.S1_at--353--2512Chr04:16241166..16241639 (25 bp)
AACATCTCCCTTGTCGAGTTGGGAA
NONE
Os.11829.1.S1_at--837--2773Chr11:24678649..24678673 (25 bp)
AAGAGATGCTGGCTTTCGCGGATCC
LOC_Os11g41870
Os.11829.1.S1_at--830--6372Chr11:24678629..24678653 (25 bp)
GATCCGTGCGGTTGATGTGTTGCTT
LOC_Os11g41870
Os.11829.1.S1_at--347--791Chr01:14687866..14687890 (25 bp)
ATGTGTTGCTTTCACCAGATCTGGT
LOC_Os01g25920
Os.11829.1.S1_at--934--6551Chr01:14687759..14687783 (25 bp)
GATTCAGTTTTGCAGGATTCACAAC
LOC_Os01g25920
Os.11829.1.S1_at--64--2631Chr01:14687737..14687761 (25 bp)
AACCTCTCTCGTAGACAGTTTTTCG
LOC_Os01g25920
Os.11829.1.S1_at--259--10372Chr04:16240937..16240961 (25 bp)
TTTTTTCCATTCTCCTATTGATCCT
LOC_Os04g27800
Os.11829.1.S1_at--581--3813Chr11:24678446..24678767 (25 bp)
CTCCTATTGATCCTTCCTTTGTGAA
LOC_Os11g41870
Os.11829.1.S1_at--663--10051Chr01:14687623..14687647 (25 bp)
TAGTTCTGATTGTTTCTGACAGTCA
LOC_Os01g25920
Target Sequence 
ACGACAGCTACAGTGGCTGCAACGACGGCGACGACAGCGGCGACGCTAGCTGCGACGATGACGATGACGATGACCAGCGG
CGGCCGGCGACTTGCAATCGAGAGGCGGGCAGGTGGCGCGGGCCGCGGGGGCACGCGGCACGGGGCAAGGGTGCAGGGCA
GCAGGCCAGCGGCGCGTCGGGATCTGGGTGAGGGTAACATCTCCCTTGTCGAGTTGGGAAATCGGTAGAAGAGATGCTGG
CTTTCGCGGATCCGTGCGGTTGATGTGTTGCTTTCACCAGATCTGGTGGTTTATTGGGGTATTCTGTTGGTGCTTGATTG
CTGCTGCTGCTGGAGTGATTTGTAGCCGAGATAAAGACGACGAGTAGAGGATTCAGTTTTGCAGGATTCACAACCTCTCT
CGTAGACAGTTTTTCGTGTGAATCAGTCTTGAAATGGAGTAGTGATTAGCAATTTTTTTTCCATTCTCCTATTGATCCTT
CCTTTGTGAAAATTAGAGCAGTAATTAGTTCTGATTGTTTCTGACAGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis