Browse Element(s) Details


Os.5375.1.S1_at

Description gb:AK065466.1
DB_XREF= gi:32975484
TID=Os.5375.1
CNT=31
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.5375 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013007F18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013007F18, full insert sequence.
FL= gb:AK065466.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2599011/11esterase/lipase/thioesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25920Os.11829.1.S2_at11/111+14685138..14688095hypothetical protein
LOC_Os01g25920Os.11829.1.S1_at10/111+14685138..14688095hypothetical protein
LOC_Os01g25920Os.38368.1.S1_s_at1/111+14685138..14688095hypothetical protein
LOC_Os01g25920OsAffx.18868.5.S1_x_at1/111+14685138..14688095hypothetical protein
LOC_Os01g25920Os.11706.1.S1_x_at1/111+14685138..14688095hypothetical protein
LOC_Os01g25930NANA1+14690301..14691545transposon protein, putative, unclassified
LOC_Os01g25940NANA1+14695953..14696432hypothetical protein
LOC_Os01g25950Os.53142.1.S1_at3/111+14698069..14700868retrotransposon protein, putative, unclassified
LOC_Os01g25960OsAffx.27924.1.S1_at2/111+14703918..14707124retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25960OsAffx.26951.1.S1_at1/111+14703918..14707124retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25970NANA1+14708286..14709464retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25980NANA1+14711545..14712117retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25990Os.5375.1.S1_at11/111+14712629..14720895esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g25990OsAffx.31138.1.S1_x_at2/111+14712629..14720895esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g25990Os.54405.1.S1_at1/111+14712629..14720895esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g26000OsAffx.23399.1.S1_at10/111+14725434..14730633hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g26010OsAffx.23400.1.S1_at11/111+14731883..14732571hypothetical protein
LOC_Os01g26020Os.18293.1.S1_at9/111+14734782..14737053expressed protein
LOC_Os01g26039Os.17002.1.S1_at11/111+14737314..14746988esterase/lipase/thioesterase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5375.1.S1_at--853--3071Chr01:14714806..14714830 (25 bp)
AATCAGGTCTTACACTTGCCTGCTG
LOC_Os01g25990
Os.5375.1.S1_at--1058--4451Chr01:14714789..14714813 (25 bp)
GCCTGCTGTTCTACCTAAATTACCA
LOC_Os01g25990
Os.5375.1.S1_at--76--10471Chr01:14714770..14714794 (25 bp)
TTACCAGGTCGGCTATACTATCTAT
LOC_Os01g25990
Os.5375.1.S1_at--483--7811Chr01:14714764..14714788 (25 bp)
GGTCGGCTATACTATCTATTTGGAA
LOC_Os01g25990
Os.5375.1.S1_at--307--7651Chr01:14714697..14714721 (25 bp)
GGGAGAGTGCAAACCAATTATATTT
LOC_Os01g25990
Os.5375.1.S1_at--138--6011Chr01:14714622..14714646 (25 bp)
GAGAGCAAGATCCTTACCGAAGCAT
LOC_Os01g25990
Os.5375.1.S1_at--1135--9951Chr01:14714608..14714632 (25 bp)
TACCGAAGCATCACAGCGCGCACGT
LOC_Os01g25990
Os.5375.1.S1_at--1085--4551Chr01:14714593..14714617 (25 bp)
GCGCGCACGTTTTATCAGGCAACAT
LOC_Os01g25990
Os.5375.1.S1_at--323--8031Chr01:14714566..14714590 (25 bp)
GGAGTTACTGCTCAAATCCCTACTT
LOC_Os01g25990
Os.5375.1.S1_at--13--3271Chr01:14714554..14714578 (25 bp)
CAAATCCCTACTTTCGAACCATGAA
LOC_Os01g25990
Os.5375.1.S1_at--1101--6451Chr01:14714451..14714475 (25 bp)
GATAAATACCACCTATTGCTTGTTC
LOC_Os01g25990
Target Sequence 
AATCAGGTCTTACACTTGCCTGCTGTTCTACCTAAATTACCAGGTCGGCTATACTATCTATTTGGAAAACCAATTGAAAT
GAAAGGAATGGACGGTGTACAGAGGGATAGGGAGAGTGCAAACCAATTATATTTGGACATCAAGTCAGAGGTGGAGAATA
TAATGTCTTATCTGAAGAGGAAGAGAGAGCAAGATCCTTACCGAAGCATCACAGCGCGCACGTTTTATCAGGCAACATGG
GGAGTTACTGCTCAAATCCCTACTTTCGAACCATGAAAATTAGGTTCAAATGTATTTTGTGGGAATGAGATTAATTTATG
AACATTGACAGCAGAAAGGNTGGGAAAGAAGATAAGATAAATACCACCTATTGCTTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5375.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis