Browse Element(s) Details


OsAffx.31138.1.S1_x_at

Description tigr:9639.m02278
TID=OsAffx.31138.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2577010/11hypothetical protein
LOC_Os01g259902/11esterase/lipase/thioesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25720OsAffx.12157.1.S1_at1/1111+14169398..14170956retrotransposon protein, putative, unclassified
LOC_Os11g25730Os.47905.1.S1_at10/1111+14172615..14175123UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os11g25730OsAffx.30264.1.S1_at1/1111+14172615..14175123UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os11g25740NANA11+14177487..14177930hypothetical protein
LOC_Os11g25750OsAffx.19022.2.S1_s_at11/1111+14184240..14187095Zinc knuckle family protein
LOC_Os11g25760OsAffx.19021.1.S1_at11/1111+14191792..14192577hypothetical protein
LOC_Os11g25770OsAffx.31138.1.S1_x_at10/1111+14194853..14196622hypothetical protein
LOC_Os11g25780Os.25589.1.S1_at11/1111+14204976..14206065PB1 domain containing protein, expressed
LOC_Os11g25780Os.25589.3.S1_x_at4/1111+14204976..14206065PB1 domain containing protein, expressed
LOC_Os11g25790NANA11+14207021..14207275hypothetical protein
LOC_Os11g25800Os.25589.3.S1_x_at11/1111+14212973..14214293PB1 domain containing protein, expressed
LOC_Os11g25800Os.25589.3.S1_at11/1111+14212973..14214293PB1 domain containing protein, expressed
LOC_Os11g25810NANA11+14218586..14221617retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31138.1.S1_x_at--357--1131Chr11:14194883..14194907 (25 bp)
AGTGCTTCCTTGCTGCCGTTGTGCG
LOC_Os11g25770
OsAffx.31138.1.S1_x_at--998--4311Chr11:14194890..14194914 (25 bp)
CCTTGCTGCCGTTGTGCGAGGCGCA
LOC_Os11g25770
OsAffx.31138.1.S1_x_at--271--4711Chr11:14194918..14194942 (25 bp)
GCGGCCTTGCCATGATGTGGCGTCC
LOC_Os11g25770
OsAffx.31138.1.S1_x_at--409--3631Chr11:14194923..14194947 (25 bp)
CTTGCCATGATGTGGCGTCCGTGGT
LOC_Os11g25770
OsAffx.31138.1.S1_x_at--392--9291NONE
TCCGTGGTGCGGTGTGATGGATGCA
NONE
OsAffx.31138.1.S1_x_at--198--7992Chr11:14195929..14195953 (25 bp)
GGATGCAAAATCACCAACAGCCATG
LOC_Os11g25770
OsAffx.31138.1.S1_x_at--87--392Chr11:14195938..14195962 (25 bp)
ATCACCAACAGCCATGCTGCAGGCG
LOC_Os11g25770
OsAffx.31138.1.S1_x_at--254--631Chr11:14195951..14195975 (25 bp)
ATGCTGCAGGCGCCGACAACGAGTC
LOC_Os11g25770
OsAffx.31138.1.S1_x_at--364--4334Chr11:14195979..14196003 (25 bp)
CCATCCCCGACCGAAGGTGATAGAG
LOC_Os11g25770
OsAffx.31138.1.S1_x_at--1062--5814Chr11:14195987..14196006 (20 bp)
GACCGAAGGTGATAGAGCAGATGTT
LOC_Os11g25770
OsAffx.31138.1.S1_x_at--134--2991Chr11:14196558..14196582 (25 bp)
AATGTTATGGAAATGGTGTTCTAGA
LOC_Os11g25770
Target Sequence 
AGTGCTTCCTTGCTGCCGTTGTGCGAGGCGCAGGCGCGGCCTTGCCATGATGTGGCGTCCGTGGTGCGGTGTGATGGATG
CAAAATCACCAACAGCCATGCTGCAGGCGCCGACAACGAGTCCCGCCATCCCCGACCGAAGGTGATAGAGCAGATGTTGA
AATGTTATGGAAATGGTGTTCTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31138.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis