Browse Element(s) Details


Os.47905.1.S1_at

Description gb:AK099588.1
DB_XREF= gi:32984797
TID=Os.47905.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47905 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043F17, full insert sequence.
FL= gb:AK099588.1 gb:AK105931.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2573010/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25670OsAffx.22699.1.S1_x_at2/1111+14143601..14149196retrotransposon protein, putative, unclassified
LOC_Os11g25670OsAffx.8279.1.S1_at1/1111+14143601..14149196retrotransposon protein, putative, unclassified
LOC_Os11g25680NANA11+14149751..14150554hypothetical protein
LOC_Os11g25690Os.46012.2.S1_x_at8/1111+14151656..14157029retrotransposon protein, putative, unclassified
LOC_Os11g25690Os.46012.3.S1_x_at6/1111+14151656..14157029retrotransposon protein, putative, unclassified
LOC_Os11g25690Os.27088.1.A1_x_at4/1111+14151656..14157029retrotransposon protein, putative, unclassified
LOC_Os11g25690OsAffx.8801.1.S1_at1/1111+14151656..14157029retrotransposon protein, putative, unclassified
LOC_Os11g25700Os.55512.1.S1_at11/1111+14160539..14163697Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os11g25710NANA11+14164808..14165638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25720OsAffx.12157.1.S1_at1/1111+14169398..14170956retrotransposon protein, putative, unclassified
LOC_Os11g25730Os.47905.1.S1_at10/1111+14172615..14175123UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os11g25730OsAffx.30264.1.S1_at1/1111+14172615..14175123UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os11g25740NANA11+14177487..14177930hypothetical protein
LOC_Os11g25750OsAffx.19022.2.S1_s_at11/1111+14184240..14187095Zinc knuckle family protein
LOC_Os11g25760OsAffx.19021.1.S1_at11/1111+14191792..14192577hypothetical protein
LOC_Os11g25770OsAffx.31138.1.S1_x_at10/1111+14194853..14196622hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47905.1.S1_at--193--8271Chr11:14173137..14173161 (25 bp)
GGCAGGATAGTCTCTTGGGCACCGC
LOC_Os11g25730
Os.47905.1.S1_at--844--6071Chr11:14173042..14173066 (25 bp)
GAGTATATCTGAAGGCGTGCCGATG
LOC_Os11g25730
Os.47905.1.S1_at--525--7291Chr11:14173026..14173050 (25 bp)
GTGCCGATGATATGTAGGCCATGTT
LOC_Os11g25730
Os.47905.1.S1_at--499--991Chr11:14172808..14172832 (25 bp)
AGGAGGATCATCAGACACCGGTCTA
LOC_Os11g25730
Os.47905.1.S1_at--1160--3391Chr11:14172797..14172821 (25 bp)
CAGACACCGGTCTACGTAACTTAGT
LOC_Os11g25730
Os.47905.1.S1_at--1134--5511Chr11:14172752..14172776 (25 bp)
GAAAATGTTGATTATCTGCACAGAT
LOC_Os11g25730
Os.47905.1.S1_at--153--6511Chr11:14172730..14172754 (25 bp)
GATATAACGTAGTCATGTCTTCGAC
LOC_Os11g25730
Os.47905.1.S1_at--492--6831Chr11:14172714..14172738 (25 bp)
GTCTTCGACTAATACTTGTAGCCTC
LOC_Os11g25730
Os.47905.1.S1_at--1079--10492Chr03:8369335..8369355 (21 bp)
TTCATCTACTACTAATAACCAGGTT
NONE
Os.47905.1.S1_at--359--9791Chr11:14172623..14172647 (25 bp)
TAACCAGGTTCAAAAATTGCCGAAT
LOC_Os11g25730
Os.47905.1.S1_at--1161--4511NONE
GCCGCATCAAATAGAACTGTTCGCT
NONE
Target Sequence 
GGCAGGATAGTCTCTTGGGCACCGCNAAGAAAAGGTACTAGGTCANCCTTCTGTNCGCGCATTCATGACGNATNATGGAT
GGNACTCGACGATAGAGAGTATATCTGAAGGCGTGCCGATGATATGTAGGCCATGTTTTGGAGATCAGATGGGAAATGCG
AGGTATGTTTGTGCTGTTTGGAGGTTGGGTGTGGAGATGGAGGTAGGGAGTGTTCTGCAGAGGGCAAAAGTTCAAACTGC
TGTTGAGAAATTAGTGAATGGGGAGGAAGGTCAAAATGTGAAACAGAGAATGAGAAATCTGAGGATAGAAGCTGAAAAAT
GTGTTAGTAAAGGAGGATCATCAGACACCGGTCTACGTAACTTAGTAGATTCGATATTATCTTTTGGAAAATGTTGATTA
TCTGCACAGATATAACGTAGTCATGTCTTCGACTAATACTTGTAGCCTCTTTNNNAANNATGCGGATGGTATTGAGAAGA
TCATTAAATGTTGTAATATCTAGTTTTCATCTACTACTAATAACCAGGTTCAAAAATTGCCGAATAGAATTNCAAATTCA
GCCGCATCAAATAGAACTGTTCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47905.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis