Browse Element(s) Details


OsAffx.19022.2.S1_s_at

Description tigr:9639.m02280
TID=OsAffx.19022.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc knuckle, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2575011/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25700Os.55512.1.S1_at11/1111+14160539..14163697Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os11g25710NANA11+14164808..14165638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25720OsAffx.12157.1.S1_at1/1111+14169398..14170956retrotransposon protein, putative, unclassified
LOC_Os11g25730Os.47905.1.S1_at10/1111+14172615..14175123UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os11g25730OsAffx.30264.1.S1_at1/1111+14172615..14175123UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os11g25740NANA11+14177487..14177930hypothetical protein
LOC_Os11g25750OsAffx.19022.2.S1_s_at11/1111+14184240..14187095Zinc knuckle family protein
LOC_Os11g25760OsAffx.19021.1.S1_at11/1111+14191792..14192577hypothetical protein
LOC_Os11g25770OsAffx.31138.1.S1_x_at10/1111+14194853..14196622hypothetical protein
LOC_Os11g25780Os.25589.1.S1_at11/1111+14204976..14206065PB1 domain containing protein, expressed
LOC_Os11g25780Os.25589.3.S1_x_at4/1111+14204976..14206065PB1 domain containing protein, expressed
LOC_Os11g25790NANA11+14207021..14207275hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19022.2.S1_s_at--447--4031Chr11:14185181..14185205 (25 bp)
CGATCAAGTCGGTGTTTCAGCGTTT
LOC_Os11g25750
OsAffx.19022.2.S1_s_at--409--4031Chr11:14185161..14185185 (25 bp)
CGTTTGAAGGCTCCTCTCCAGAAAA
LOC_Os11g25750
OsAffx.19022.2.S1_s_at--878--10331Chr11:14184949..14184973 (25 bp)
TTTACGGTGCTTTTCTTGTTTGGAG
LOC_Os11g25750
OsAffx.19022.2.S1_s_at--898--9591Chr11:14184919..14184943 (25 bp)
TCATATGGACCGTTACTGTTCAGCC
LOC_Os11g25750
OsAffx.19022.2.S1_s_at--862--9971Chr11:14184730..14184754 (25 bp)
TACCTCGCATACAATGGCTGATCTC
LOC_Os11g25750
OsAffx.19022.2.S1_s_at--370--4571Chr11:14184646..14184670 (25 bp)
GCGCGTGCTGTGTGTTGATCTTACC
LOC_Os11g25750
OsAffx.19022.2.S1_s_at--662--9411Chr11:14184604..14184628 (25 bp)
TCGTCGTCATGAGGATGTCTGCATC
LOC_Os11g25750
OsAffx.19022.2.S1_s_at--98--2771Chr11:14184551..14184575 (25 bp)
AAGACTGGTATCATCATCGGGCACT
LOC_Os11g25750
OsAffx.19022.2.S1_s_at--1009--491Chr11:14184536..14184560 (25 bp)
ATCGGGCACTCATATCGGATCATAT
LOC_Os11g25750
OsAffx.19022.2.S1_s_at--643--3072Chr11:14184299..14184323 (25 bp)
AATAACTTGGCGACTGACGTCCGGT
LOC_Os11g25750
OsAffx.19022.2.S1_s_at--1--1912Chr11:14184283..14184307 (25 bp)
ACGTCCGGTCATGCCGATCAGAGAA
LOC_Os11g25750
Target Sequence 
CGATCAAGTCGGTGTTTCAGCGTTTGAAGGCTCCTCTCCAGAAAAGAAGGCCTTTACGGTGCTTTTCTTGTTTGGAGTCT
GGTCATATGGACCGTTACTGTTCAGCCCCCAGGCCCGCTGCAGCCCATCAATCTGCAGGGAAGTTTCCGAAACATGGTTC
TCGGAATAATCTAGTTTGGAGAGCTAAATCTTCTCCGGCCAAAAAGATGGCAGTTTTTCCCCGTATCCCTTCCTCTCCCA
AGAACACTGTTCAATCTAATCCCCAAAACTTTACCTCGCATACAATGGCTGATCTCAACCCTAACCCGCAACATTTTCTT
CGTCAAGGGCAAGTGGTTCATCACGGTGGTAACTTGCGCGTGCTGTGTGTTGATCTTACCGTCCCTCAATGTCCGCCTCG
TCGTCATGAGGATGTCTGCATCGCCATAGTGGAGCCTGGCGTCCCCGAGCAAGACTGGTATCATCATCGGGCACTCATAT
CGGATCATATCTTTGAAGTTCACATGTATGAGGAAAATAACTTGGCGACTGACGTCCGGTCATGCCGATCAGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19022.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis