Browse Element(s) Details


Os.25589.1.S1_at

Description gb:AK066452.1
DB_XREF= gi:32976470
TID=Os.25589.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.25589 (NCBI UniGene Cluster)
UG_TITLE=Susceptibility antioxidant protein (RREO) mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013061N18, full insert sequence.
FL= gb:AK104816.1 gb:AK066452.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2578011/11PB1 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25750OsAffx.19022.2.S1_s_at11/1111+14184240..14187095Zinc knuckle family protein
LOC_Os11g25760OsAffx.19021.1.S1_at11/1111+14191792..14192577hypothetical protein
LOC_Os11g25770OsAffx.31138.1.S1_x_at10/1111+14194853..14196622hypothetical protein
LOC_Os11g25780Os.25589.1.S1_at11/1111+14204976..14206065PB1 domain containing protein, expressed
LOC_Os11g25780Os.25589.3.S1_x_at4/1111+14204976..14206065PB1 domain containing protein, expressed
LOC_Os11g25790NANA11+14207021..14207275hypothetical protein
LOC_Os11g25800Os.25589.3.S1_x_at11/1111+14212973..14214293PB1 domain containing protein, expressed
LOC_Os11g25800Os.25589.3.S1_at11/1111+14212973..14214293PB1 domain containing protein, expressed
LOC_Os11g25810NANA11+14218586..14221617retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g25820NANA11+14225783..14226127hypothetical protein
LOC_Os11g25830NANA11+14226948..14228538retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25589.1.S1_at--925--7291Chr11:14205696..14205720 (25 bp)
GTGCCCACTACCAGCATCAGACTGG
LOC_Os11g25780
Os.25589.1.S1_at--662--4691Chr11:14205749..14205773 (25 bp)
GCGGCGCGTCAGATGTCGTTGCCTC
LOC_Os11g25780
Os.25589.1.S1_at--529--1311Chr11:14205759..14205783 (25 bp)
AGATGTCGTTGCCTCCTGCTCGCGT
LOC_Os11g25780
Os.25589.1.S1_at--691--4351Chr11:14205855..14205879 (25 bp)
CCAGCAGCCGCTGGTAATAGCGATC
LOC_Os11g25780
Os.25589.1.S1_at--133--2631Chr11:14205888..14205912 (25 bp)
AACCGGCCGCGGTCTAGTATCTGCG
LOC_Os11g25780
Os.25589.1.S1_at--505--4211Chr11:14205894..14205918 (25 bp)
CCGCGGTCTAGTATCTGCGTGCCTT
LOC_Os11g25780
Os.25589.1.S1_at--58--9111Chr11:14205909..14205933 (25 bp)
TGCGTGCCTTACACGTACTCGGTAC
LOC_Os11g25780
Os.25589.1.S1_at--183--7851Chr11:14205929..14205953 (25 bp)
GGTACTCGCGTAACCCTGCGCTGTA
LOC_Os11g25780
Os.25589.1.S1_at--760--4191Chr11:14205942..14205966 (25 bp)
CCCTGCGCTGTACGTACTAATGAAG
LOC_Os11g25780
Os.25589.1.S1_at--791--4991Chr11:14205978..14206002 (25 bp)
GCATGTACTGTTGTGCTGGGTCTTT
LOC_Os11g25780
Os.25589.1.S1_at--639--6991Chr11:14205982..14206006 (25 bp)
GTACTGTTGTGCTGGGTCTTTTAAA
LOC_Os11g25780
Target Sequence 
GTGCCCACTACCAGCATCAGACTGGCAGCGCGCCGTCGTGCGCATCCCGGTGGGCGGCGCGTCAGATGTCGTTGCCTCCT
GCTCGCGTTCCGCACCAGCAGCAGCATTACAACCGGCACGGCGGCGACGCGCGGCCGCAACGGTACCTAGTCCAGAGTGC
CAGCAGCCGCTGGTAATAGCGATCAGATNGCGAACCGGCCGCGGTCTAGTATCTGCGTGCCTTACACGTACTCGGTACTC
GCGTAACCCTGCGCTGTACGTACTAATGAAGGTGTTTAATTAGCATGTACTGTTGTGCTGGGTCTTTTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25589.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis