Browse Element(s) Details


OsAffx.19021.1.S1_at

Description tigr:9639.m02279
TID=OsAffx.19021.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2576011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25720OsAffx.12157.1.S1_at1/1111+14169398..14170956retrotransposon protein, putative, unclassified
LOC_Os11g25730Os.47905.1.S1_at10/1111+14172615..14175123UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os11g25730OsAffx.30264.1.S1_at1/1111+14172615..14175123UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os11g25740NANA11+14177487..14177930hypothetical protein
LOC_Os11g25750OsAffx.19022.2.S1_s_at11/1111+14184240..14187095Zinc knuckle family protein
LOC_Os11g25760OsAffx.19021.1.S1_at11/1111+14191792..14192577hypothetical protein
LOC_Os11g25770OsAffx.31138.1.S1_x_at10/1111+14194853..14196622hypothetical protein
LOC_Os11g25780Os.25589.1.S1_at11/1111+14204976..14206065PB1 domain containing protein, expressed
LOC_Os11g25780Os.25589.3.S1_x_at4/1111+14204976..14206065PB1 domain containing protein, expressed
LOC_Os11g25790NANA11+14207021..14207275hypothetical protein
LOC_Os11g25800Os.25589.3.S1_x_at11/1111+14212973..14214293PB1 domain containing protein, expressed
LOC_Os11g25800Os.25589.3.S1_at11/1111+14212973..14214293PB1 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19021.1.S1_at--967--8411Chr11:14192523..14192547 (25 bp)
GGCCTACCTCGAAGCAGCAACGTGC
LOC_Os11g25760
OsAffx.19021.1.S1_at--76--1911Chr11:14192504..14192528 (25 bp)
ACGTGCTGGCGCAGGTCTGCATCAT
LOC_Os11g25760
OsAffx.19021.1.S1_at--183--7811Chr11:14192491..14192515 (25 bp)
GGTCTGCATCATATGCGACGTGAAC
LOC_Os11g25760
OsAffx.19021.1.S1_at--70--2891Chr11:14192057..14192483 (25 bp)
AAGGGAGGAGCAACCTCCACTACGC
LOC_Os11g25760
OsAffx.19021.1.S1_at--325--8431Chr11:14192008..14192032 (25 bp)
GGCCTCCGCTCCATTACAGAAAGTG
LOC_Os11g25760
OsAffx.19021.1.S1_at--471--7091Chr11:14191963..14191987 (25 bp)
GTCAACAATTGCGAGGCGGCCTATT
LOC_Os11g25760
OsAffx.19021.1.S1_at--461--7491Chr11:14191924..14191948 (25 bp)
GGGCCTACCGGAGCTGTCTTGGTTC
LOC_Os11g25760
OsAffx.19021.1.S1_at--421--6851Chr11:14191909..14191933 (25 bp)
GTCTTGGTTCGCTTGGTGGCCTGCC
LOC_Os11g25760
OsAffx.19021.1.S1_at--178--10071Chr11:14191879..14191903 (25 bp)
TAGTGGGCTGTTTGGCCTATTGGCT
LOC_Os11g25760
OsAffx.19021.1.S1_at--905--10231Chr11:14191862..14191886 (25 bp)
TATTGGCTGGGCCATTCTTGTCTAG
LOC_Os11g25760
OsAffx.19021.1.S1_at--79--1991Chr11:14191833..14191857 (25 bp)
ACTGCTCCGGTAGGCAGGCCTGGTA
LOC_Os11g25760
Target Sequence 
GGCCTACCTCGAAGCAGCAACGTGCTGGCGCAGGTCTGCATCATATGCGACGTGAACGCGATGCAAGGGAGGAGCAACCT
CCACTACGCTCCGGCCCAAGCCTTCCGGCGACGGGCCTCCGCTCCATTACAGAAAGTGCAAATGAATTTGAATCACAAGT
CAACAATTGCGAGGCGGCCTATTGGCTGGGAGCCTGCGGGCCTACCGGAGCTGTCTTGGTTCGCTTGGTGGCCTGCCGGC
TCTAGTGGGCTGTTTGGCCTATTGGCTGGGCCATTCTTGTCTAGCCCCACTGCTCCGGTAGGCAGGCCTGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis