Browse Element(s) Details


Os.17002.1.S1_at

Description gb:AK065319.1
DB_XREF= gi:32975337
TID=Os.17002.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17002 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002P11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002P11, full insert sequence.
FL= gb:AK065319.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2603911/11esterase/lipase/thioesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25990Os.5375.1.S1_at11/111+14712629..14720895esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g25990OsAffx.31138.1.S1_x_at2/111+14712629..14720895esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g25990Os.54405.1.S1_at1/111+14712629..14720895esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g26000OsAffx.23399.1.S1_at10/111+14725434..14730633hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g26010OsAffx.23400.1.S1_at11/111+14731883..14732571hypothetical protein
LOC_Os01g26020Os.18293.1.S1_at9/111+14734782..14737053expressed protein
LOC_Os01g26039Os.17002.1.S1_at11/111+14737314..14746988esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g26060OsAffx.23402.1.S1_at10/111+14749764..14751621hypothetical protein
LOC_Os01g26070Os.51354.1.S1_at11/111+14751752..14752362expressed protein
LOC_Os01g26080OsAffx.11209.1.S1_at10/111+14760287..14761591hypothetical protein
LOC_Os01g26090OsAffx.11210.1.S1_at11/111+14768659..14769260hypothetical protein
LOC_Os01g26100OsAffx.2089.1.S1_at11/111+14770603..14770962hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17002.1.S1_at--1011--2751Chr01:14737865..14737889 (25 bp)
AAGACGTTCACATACCTGCTTTGCT
LOC_Os01g26039
Os.17002.1.S1_at--886--9091Chr01:14737844..14737868 (25 bp)
TGCTCCCCAAAGTGCCAGGCCGGTT
LOC_Os01g26039
Os.17002.1.S1_at--303--4491Chr01:14737826..14737850 (25 bp)
GCCGGTTCTACTACCTATTTGGCAA
LOC_Os01g26039
Os.17002.1.S1_at--641--6951Chr01:14737719..14737743 (25 bp)
GTAGAGAGCTTAATGTCATATCTGA
LOC_Os01g26039
Os.17002.1.S1_at--817--6351Chr01:14737677..14737701 (25 bp)
GATCCTTACAGAAGCATAGCGCAGC
LOC_Os01g26039
Os.17002.1.S1_at--532--10851Chr01:14737590..14737614 (25 bp)
TTGGGTGATCTCGTGGTACTGTGAT
LOC_Os01g26039
Os.17002.1.S1_at--117--7011Chr01:14737575..14737599 (25 bp)
GTACTGTGATTGAATGAGCATCGGC
LOC_Os01g26039
Os.17002.1.S1_at--904--691Chr01:14737562..14737586 (25 bp)
ATGAGCATCGGCAATCTTGTGTTCC
LOC_Os01g26039
Os.17002.1.S1_at--103--8231Chr01:14737553..14737577 (25 bp)
GGCAATCTTGTGTTCCGAAGCAAAC
LOC_Os01g26039
Os.17002.1.S1_at--351--4951Chr01:14737494..14737518 (25 bp)
GCATTTTCAGTAGGCTGGCTGCAAG
LOC_Os01g26039
Os.17002.1.S1_at--94--5171Chr01:14737474..14737498 (25 bp)
GCAAGCCTGCAACTCTTGAATCAGT
LOC_Os01g26039
Target Sequence 
AAGACGTTCACATACCTGCTTTGCTCCCCAAAGTGCCAGGCCGGTTCTACTACCTATTTGGCAAACCAATCGAANATGAA
AGGTATGGATAATGTCGTCAGAGATAGGAAAAGTNCAAACGAAGTGTATTTGNCATATCAAATCCGAANGTAGAGAGCTT
AATGTCATATCTGAAGAGGAAGAGGGAGGAAGATCCTTACAGAAGCATAGCGCAGCGTNCAGTGTACCAGGCATCTTGGG
GTGCTTCTGCNAGAGGTCCCAACATTTGAACCANTGAAGGTTGGGTGATCTCGTGGTACTGTGATTGAATGAGCATCGGC
AATCTTGTGTTCCGAAGCAAACATGGAAAGGGGGTATTATCTGTTGGAAGTAAATAGCATTTTCAGTAGGCTGGCTGCAA
GCCTGCAACTCTTGAATCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis