Browse Element(s) Details


OsAffx.2089.1.S1_at

Description tigr:9629.m02535
TID=OsAffx.2089.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2610011/11hypothetical protein
LOC_Os11g186901/11Glycosyl hydrolase family 3 C terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26039Os.17002.1.S1_at11/111+14737314..14746988esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g26060OsAffx.23402.1.S1_at10/111+14749764..14751621hypothetical protein
LOC_Os01g26070Os.51354.1.S1_at11/111+14751752..14752362expressed protein
LOC_Os01g26080OsAffx.11209.1.S1_at10/111+14760287..14761591hypothetical protein
LOC_Os01g26090OsAffx.11210.1.S1_at11/111+14768659..14769260hypothetical protein
LOC_Os01g26100OsAffx.2089.1.S1_at11/111+14770603..14770962hypothetical protein
LOC_Os01g26110OsAffx.23403.1.S1_at4/111+14774594..14775120hypothetical protein
LOC_Os01g26120Os.1740.1.S1_at11/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g26120OsAffx.11211.1.S1_at10/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g26130Os.40548.1.S1_at11/111+14781333..14786089expressed protein
LOC_Os01g26130Os.51191.1.S1_x_at11/111+14781333..14786089expressed protein
LOC_Os01g26130Os.1741.4.S1_x_at10/111+14781333..14786089expressed protein
LOC_Os01g26130Os.1741.3.A1_at8/111+14781333..14786089expressed protein
LOC_Os01g26150OsAffx.23404.2.S1_at11/111+14790276..14790956hypothetical protein
LOC_Os01g26150OsAffx.23404.1.S1_at1/111+14790276..14790956hypothetical protein
LOC_Os01g26160Os.40545.1.S1_x_at11/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.1747.3.S1_at11/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.1747.1.S1_x_at7/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.53108.1.S1_at1/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.27107.1.S1_at1/111+14792157..14804446HASTY, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2089.1.S1_at--44--1051Chr01:14770757..14770781 (25 bp)
AGGTGCTAATGTGGCTGCCGGCACC
LOC_Os01g26100
OsAffx.2089.1.S1_at--1147--9071Chr01:14770760..14770784 (25 bp)
TGCTAATGTGGCTGCCGGCACCGGC
LOC_Os01g26100
OsAffx.2089.1.S1_at--479--8251Chr01:14770800..14770824 (25 bp)
GGCAGAGGTGGCGAGAGGGCTTGTC
LOC_Os01g26100
OsAffx.2089.1.S1_at--261--6011Chr01:14770812..14770836 (25 bp)
GAGAGGGCTTGTCGGTGGCGTCGAT
LOC_Os01g26100
OsAffx.2089.1.S1_at--811--4011Chr01:14770830..14770854 (25 bp)
CGTCGATGCCCACGCTAGGGATAGA
LOC_Os01g26100
OsAffx.2089.1.S1_at--824--4051Chr01:14770833..14770857 (25 bp)
CGATGCCCACGCTAGGGATAGATGG
LOC_Os01g26100
OsAffx.2089.1.S1_at--922--2731Chr01:14770871..14770895 (25 bp)
AAGAACACATGAGATATGGAGCACT
LOC_Os01g26100
OsAffx.2089.1.S1_at--194--10111Chr01:14770885..14770909 (25 bp)
TATGGAGCACTGATAGGTGGACCCA
LOC_Os01g26100
OsAffx.2089.1.S1_at--419--8071Chr01:14770888..14770912 (25 bp)
GGAGCACTGATAGGTGGACCCATTA
LOC_Os01g26100
OsAffx.2089.1.S1_at--369--1491Chr01:14770890..14770914 (25 bp)
AGCACTGATAGGTGGACCCATTATT
LOC_Os01g26100
OsAffx.2089.1.S1_at--145--7539Chr11:13239974..13240461 (25 bp)
GTGGACCCATTATTTTAGAAATATT
NONE
Target Sequence 
AGGTGCTAATGTGGCTGCCGGCACCGGCGATGGAGAGGCTGGTGGCAGAGGTGGCGAGAGGGCTTGTCGGTGGCGTCGAT
GCCCACGCTAGGGATAGATGGGGAGGTAGAAGAGAAGAACACATGAGATATGGAGCACTGATAGGTGGACCCATTATTTT
AGAAATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis