Browse Element(s) Details


OsAffx.23403.1.S1_at

Description gb:NM_194012.1
DB_XREF= gi:34915107
GEN=P0503E05.3
TID=OsAffx.23403.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0503E05.3 (P0503E05.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g261104/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26060OsAffx.23402.1.S1_at10/111+14749764..14751621hypothetical protein
LOC_Os01g26070Os.51354.1.S1_at11/111+14751752..14752362expressed protein
LOC_Os01g26080OsAffx.11209.1.S1_at10/111+14760287..14761591hypothetical protein
LOC_Os01g26090OsAffx.11210.1.S1_at11/111+14768659..14769260hypothetical protein
LOC_Os01g26100OsAffx.2089.1.S1_at11/111+14770603..14770962hypothetical protein
LOC_Os01g26110OsAffx.23403.1.S1_at4/111+14774594..14775120hypothetical protein
LOC_Os01g26120Os.1740.1.S1_at11/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g26120OsAffx.11211.1.S1_at10/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g26130Os.40548.1.S1_at11/111+14781333..14786089expressed protein
LOC_Os01g26130Os.51191.1.S1_x_at11/111+14781333..14786089expressed protein
LOC_Os01g26130Os.1741.4.S1_x_at10/111+14781333..14786089expressed protein
LOC_Os01g26130Os.1741.3.A1_at8/111+14781333..14786089expressed protein
LOC_Os01g26150OsAffx.23404.2.S1_at11/111+14790276..14790956hypothetical protein
LOC_Os01g26150OsAffx.23404.1.S1_at1/111+14790276..14790956hypothetical protein
LOC_Os01g26160Os.40545.1.S1_x_at11/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.1747.3.S1_at11/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.1747.1.S1_x_at7/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.53108.1.S1_at1/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.27107.1.S1_at1/111+14792157..14804446HASTY, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23403.1.S1_at--546--1932Chr01:14773657..14773681 (25 bp)
ACGGATTCAATCCAATCAGCCACAC
NONE
OsAffx.23403.1.S1_at--437--9671Chr01:14773672..14773696 (25 bp)
TCAGCCACACCGTCATATCAGTAGA
NONE
OsAffx.23403.1.S1_at--103--251Chr01:14773686..14773710 (25 bp)
ATATCAGTAGAAGGTTCAGCGTCAT
NONE
OsAffx.23403.1.S1_at--418--7891Chr01:14773698..14773722 (25 bp)
GGTTCAGCGTCATGGACAGACAAAG
NONE
OsAffx.23403.1.S1_at--192--1331Chr01:14773721..14773742 (22 bp)
AGAGGAGTCGCACTATATTTGTTGT
NONE
OsAffx.23403.1.S1_at--389--8151Chr01:14774561..14774585 (25 bp)
GGAAAAGAAACTCGGCTGCCTCCTG
NONE
OsAffx.23403.1.S1_at--789--831Chr01:14774594..14774618 (25 bp)
ATGGATGCCACCCTCACTAGTGTTC
NONE
OsAffx.23403.1.S1_at--200--4191Chr01:14774604..14774628 (25 bp)
CCCTCACTAGTGTTCATCGACAATT
LOC_Os01g26110
OsAffx.23403.1.S1_at--32--5611Chr01:14774622..14774646 (25 bp)
GACAATTGCGACCATCGGAGTCCTG
LOC_Os01g26110
OsAffx.23403.1.S1_at--274--491Chr01:14774635..14774659 (25 bp)
ATCGGAGTCCTGTCCTCATCCTGCT
LOC_Os01g26110
OsAffx.23403.1.S1_at--931--4151Chr01:14774762..14774786 (25 bp)
CCCACACCATCTTTGATCGCAGGAG
LOC_Os01g26110
Target Sequence 
ACGGATTCAATCCAATCAGCCACACCGTCATATCAGTAGAAGGTTCAGCGTCATGGACAGACAAAGAGGAGTCGCACTAT
ATTTGTTGTGGGGGCATAGATGGAAAAGAAACTCGGCTGCCTCCTGCATCCGCCATGGATGCCACCCTCACTAGTGTTCA
TCGACAATTGCGACCATCGGAGTCCTGTCCTCATCCTGCTCGGCTGCCGCCGTCTCTCACGTCCTCCGCACAAACGTCCT
CATCCAGCCCTGGTCGCCGCCGCCGCATGAGCGCCCTCGTCAAGCCTGGCCAGCCGCAAGATCCCACACCATCTTTGATC
GCAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23403.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis