Browse Element(s) Details


Os.1741.4.S1_x_at

Description gb:NM_194014.1
DB_XREF= gi:34915111
GEN=P0503E05.5
TID=Os.1741.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.1741 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0503E05.5 (P0503E05.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0503E05.5 (P0503E05.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2613010/11expressed protein
LOC_Os06g052601/11Pectate lyase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26080OsAffx.11209.1.S1_at10/111+14760287..14761591hypothetical protein
LOC_Os01g26090OsAffx.11210.1.S1_at11/111+14768659..14769260hypothetical protein
LOC_Os01g26100OsAffx.2089.1.S1_at11/111+14770603..14770962hypothetical protein
LOC_Os01g26110OsAffx.23403.1.S1_at4/111+14774594..14775120hypothetical protein
LOC_Os01g26120Os.1740.1.S1_at11/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g26120OsAffx.11211.1.S1_at10/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g26130Os.40548.1.S1_at11/111+14781333..14786089expressed protein
LOC_Os01g26130Os.51191.1.S1_x_at11/111+14781333..14786089expressed protein
LOC_Os01g26130Os.1741.4.S1_x_at10/111+14781333..14786089expressed protein
LOC_Os01g26130Os.1741.3.A1_at8/111+14781333..14786089expressed protein
LOC_Os01g26150OsAffx.23404.2.S1_at11/111+14790276..14790956hypothetical protein
LOC_Os01g26150OsAffx.23404.1.S1_at1/111+14790276..14790956hypothetical protein
LOC_Os01g26160Os.40545.1.S1_x_at11/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.1747.3.S1_at11/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.1747.1.S1_x_at7/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.53108.1.S1_at1/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.27107.1.S1_at1/111+14792157..14804446HASTY, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0016829molecular_functionlyase activity
GO:0030570molecular_functionpectate lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1741.4.S1_x_at--92--9991Chr01:14782522..14782546 (25 bp)
TACCAGCGCTGGTGTACGACGGCAC
LOC_Os01g26130
Os.1741.4.S1_x_at--293--6991Chr01:14782535..14782559 (25 bp)
GTACGACGGCACGAAGTTTTGCAAT
LOC_Os01g26130
Os.1741.4.S1_x_at--61--5191Chr01:14782555..14782579 (25 bp)
GCAATGGCGTCGTGCTTGGGACAAT
LOC_Os01g26130
Os.1741.4.S1_x_at--66--5611NONE
GACAATAGGAGCTAGCGTGAAGGTT
NONE
Os.1741.4.S1_x_at--259--1012Chr06:2373263..2373407 (24 bp)
AGGTTCTCAAGGAGGTGACCAAGAC
LOC_Os06g05260
Os.1741.4.S1_x_at--1138--8531Chr01:14783369..14783393 (25 bp)
TGGAGGTGCCCTTGGCGTTGACCAA
LOC_Os01g26130
Os.1741.4.S1_x_at--901--5291Chr01:14783400..14783424 (25 bp)
GAAGGCAAATCTTGAGACATCCTCA
LOC_Os01g26130
Os.1741.4.S1_x_at--364--5671Chr01:14783415..14783439 (25 bp)
GACATCCTCATTCTTTGAGACTCTT
LOC_Os01g26130
Os.1741.4.S1_x_at--233--2151Chr01:14783446..14783470 (25 bp)
ACAGAGTTCCCGGTCAGGACATGGA
LOC_Os01g26130
Os.1741.4.S1_x_at--93--7811Chr01:14783457..14783481 (25 bp)
GGTCAGGACATGGATGCGCATCTTT
LOC_Os01g26130
Os.1741.4.S1_x_at--740--6351Chr01:14783469..14783493 (25 bp)
GATGCGCATCTTTGTGAAGGTTAGA
LOC_Os01g26130
Target Sequence 
TACCAGCGCTGGTGTACGACGGCACGAAGTTTTGCAATGGCGTCGTGCTTGGGACAATAGGAGCTAGCGTGAAGGTTCTC
AAGGAGGTGACCAAGACGAGGAAGGTGCCTGTGCTGGAGGTGCCCTTGGCGTTGACCAAGATCAAGAAGGCAAATCTTGA
GACATCCTCATTCTTTGAGACTCTTAGAGGGACAGAGTTCCCGGTCAGGACATGGATGCGCATCTTTGTGAAGGTTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1741.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis