Browse Element(s) Details


Os.1741.3.A1_at

Description gb:AK068183.1
DB_XREF= gi:32978201
TID=Os.1741.3
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.1741 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0503E05.5 (P0503E05.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013135J15, full insert sequence.
FL= gb:AK068183.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g261308/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26080OsAffx.11209.1.S1_at10/111+14760287..14761591hypothetical protein
LOC_Os01g26090OsAffx.11210.1.S1_at11/111+14768659..14769260hypothetical protein
LOC_Os01g26100OsAffx.2089.1.S1_at11/111+14770603..14770962hypothetical protein
LOC_Os01g26110OsAffx.23403.1.S1_at4/111+14774594..14775120hypothetical protein
LOC_Os01g26120Os.1740.1.S1_at11/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g26120OsAffx.11211.1.S1_at10/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g26130Os.40548.1.S1_at11/111+14781333..14786089expressed protein
LOC_Os01g26130Os.51191.1.S1_x_at11/111+14781333..14786089expressed protein
LOC_Os01g26130Os.1741.4.S1_x_at10/111+14781333..14786089expressed protein
LOC_Os01g26130Os.1741.3.A1_at8/111+14781333..14786089expressed protein
LOC_Os01g26150OsAffx.23404.2.S1_at11/111+14790276..14790956hypothetical protein
LOC_Os01g26150OsAffx.23404.1.S1_at1/111+14790276..14790956hypothetical protein
LOC_Os01g26160Os.40545.1.S1_x_at11/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.1747.3.S1_at11/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.1747.1.S1_x_at7/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.53108.1.S1_at1/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.27107.1.S1_at1/111+14792157..14804446HASTY, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1741.3.A1_at--429--5671Chr01:14783728..14783752 (25 bp)
GACATTGAGAACTAACTGTTACAGT
LOC_Os01g26130
Os.1741.3.A1_at--523--5131Chr01:14783782..14783806 (25 bp)
GCAAGAACTCCTGAATTCAAACTGT
LOC_Os01g26130
Os.1741.3.A1_at--1157--8151Chr01:14783847..14783871 (25 bp)
GGAACTGACATACCTAATTTTAAAT
LOC_Os01g26130
Os.1741.3.A1_at--285--8731Chr01:14783877..14783901 (25 bp)
TGTAAGGCTTTATTTTAGTCGGAAT
LOC_Os01g26130
Os.1741.3.A1_at--202--751Chr01:14783908..14783932 (25 bp)
ATGTTTGGAACCGTGGTCTGCTATA
LOC_Os01g26130
Os.1741.3.A1_at--105--5451Chr01:14783915..14783939 (25 bp)
GAACCGTGGTCTGCTATATATTATG
LOC_Os01g26130
Os.1741.3.A1_at--967--10111Chr01:14783936..14783960 (25 bp)
TATGTGTTTATCATGCCCAACTCCT
LOC_Os01g26130
Os.1741.3.A1_at--771--4551Chr01:14783950..14783974 (25 bp)
GCCCAACTCCTAAACCTGTATTTGA
LOC_Os01g26130
Os.1741.3.A1_at--667--3411NONE
CAGACGGTACCATTGGATATATGGA
NONE
Os.1741.3.A1_at--575--6511NONE
GATATATGGATCTATTTACATGGCT
NONE
Os.1741.3.A1_at--664--7631NONE
GGGAGGTATTCCATATCAAACTAAT
NONE
Target Sequence 
GACATTGAGAACTAACTGTTACAGTGTATTACTGCANCCTGTTTGCNGAACNCTGCAAGAACTCCTGAATTCAAACTGTT
TGTGATAGTGTGATGGCCATGCGATATTAACCNAAANAAGGAACTGACATACCTAATTTTAAATTGTTGTGTAAGGCTTT
ATTTTAGTCGGAATAAACAAATGTTTGGAACCGTGGTCTGCTATATATTATGTGTTTATCATGCCCAACTCCTAAACCTG
TATTTGAACTAAATGAATTTGTACTCTTGTATTGNTTATCACCACAGAAAGAGGATTGAGAATGGTGTGTATTTGTGCCC
TTAACCTTTAAGGGGAGACTCATGAAAGAAGAAAAAGATTCTAGACTTTATGGCCTTTCTGTCCCCTCAATTTCTGNCAT
TGNTTGGAGCCATGGGACCATCACCAGNTCAAAGCTACTGACAGTGCTCTTTGTAGTGGNTNCAGACGGTACCATTGGAT
ATATGGATCTATTTACATGGCTAACTTGATGCTTATAGAAATATATTGGTGGTTATGAATTTTTTTGGGAGGTATTCCAT
ATCAAACTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1741.3.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis