Browse Element(s) Details


Os.27107.1.S1_at

Description gb:AK065556.1
DB_XREF= gi:32975574
TID=Os.27107.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27107 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013028C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013028C04, full insert sequence.
FL= gb:AK065556.1 gb:AK120643.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0536811/11expressed protein
LOC_Os01g261601/11HASTY, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05320Os.54614.1.S1_at11/116+2393822..2395563Transferase family protein, expressed
LOC_Os06g05320OsAffx.27463.1.S1_x_at2/116+2393822..2395563Transferase family protein, expressed
LOC_Os06g05330OsAffx.28190.1.S1_at3/116+2397357..2397813hypothetical protein
LOC_Os06g05340OsAffx.4729.1.S1_x_at11/116+2398692..2401591activator of sporamin LUC 1, putative
LOC_Os06g05340OsAffx.4729.1.S1_at11/116+2398692..2401591activator of sporamin LUC 1, putative
LOC_Os06g05350Os.8272.1.S1_s_at11/116+2404458..2407318DNA-binding protein p24, putative, expressed
LOC_Os06g05359Os.50271.1.S1_at11/116+2409177..2417569NB-ARC domain containing protein, expressed
LOC_Os06g05359Os.41415.1.S1_at1/116+2409177..2417569NB-ARC domain containing protein, expressed
LOC_Os06g05368Os.27107.1.S1_at11/116+2417706..2421486expressed protein
LOC_Os06g05380OsAffx.15272.1.S1_at11/116+2427026..2432255WRKY DNA binding domain containing protein, expressed
LOC_Os06g05380Os.12084.1.S1_at1/116+2427026..2432255WRKY DNA binding domain containing protein, expressed
LOC_Os06g05390Os.27510.1.A1_at11/116+2432466..2436337expressed protein
LOC_Os06g05400Os.53135.1.S1_at10/116+2436600..2438808expressed protein
LOC_Os06g05410Os.10862.1.S1_at11/116+2440704..2441550expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0009965biological_processleaf morphogenesis
GO:0035281biological_processpre-microRNA export from nucleus
GO:0048364biological_processroot development
GO:0048367biological_processshoot development
GO:0005635cellular_componentnuclear envelope
GO:0005487molecular_functionnucleocytoplasmic transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27107.1.S1_at--573--6091Chr06:2421039..2421063 (25 bp)
GAGTCCTGTTTATCCAATTGTTACG
LOC_Os06g05368
Os.27107.1.S1_at--799--7451Chr06:2421101..2421125 (25 bp)
GTGTCTATGTCCTAGTCAGCCAGAA
LOC_Os06g05368
Os.27107.1.S1_at--735--3711Chr06:2421127..2421151 (25 bp)
CCAGCAGTTAGATATTCCCCTTTAT
LOC_Os06g05368
Os.27107.1.S1_at--254--10652Chr06:2421141..2421165 (25 bp)
TTCCCCTTTATTTTACCAGCTACAG
LOC_Os06g05368
Os.27107.1.S1_at--1075--8571Chr06:2421179..2421203 (25 bp)
TGGTCATATTTGCTCGTCTACTTTA
LOC_Os06g05368
Os.27107.1.S1_at--240--9411Chr06:2421192..2421216 (25 bp)
TCGTCTACTTTACTCATGTCCATGA
LOC_Os06g05368
Os.27107.1.S1_at--296--6371Chr06:2421273..2421297 (25 bp)
GATCCATAGCTACGTTTTGTTTCTA
LOC_Os06g05368
Os.27107.1.S1_at--97--5471Chr06:2421304..2421328 (25 bp)
GAACTGACTTATTGCTCTCCATTTT
LOC_Os06g05368
Os.27107.1.S1_at--3--6871Chr06:2421389..2421413 (25 bp)
GTTTGTTTATTCATCTATTCTCCTA
LOC_Os06g05368
Os.27107.1.S1_at--710--10211Chr06:2421404..2421428 (25 bp)
TATTCTCCTATCCTATATTACGTCC
LOC_Os06g05368
Os.27107.1.S1_at--894--131Chr06:2421420..2421444 (25 bp)
ATTACGTCCTGTAACTTCTTGAAGG
LOC_Os06g05368
Target Sequence 
GAGTCCTGTTTATCCAATTGTTACGTTTACGCAAAAGCGTTGAATTTATATGTTTCTAAACTGTGTCTATGTCCTAGTCA
GCCAGAAACCAGCAGTTAGATATTCCCCTTTATTTTACCAGCTACAGGATAGGTGTTCTTTGGTCATATTTGCTCGTCTA
CTTTACTCATGTCCATGATCAACTGTTTGTATGAGATAATCCTATTTAAAGGGCAACTTGATTAACTTGGACAAGATCCA
TAGCTACGTTTTGTTTCTAAATAATGAACTGACTTATTGCTCTCCATTTTTTTTTTTCTGTCAACATGGTTGTGCTCTAT
TGGTTTGCAGTTGCAGCCAAACTAAGGTACAGTTTGTTTATTCATCTATTCTCCTATCCTATATTACGTCCTGTAACTTC
TTGAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis