Browse Element(s) Details


OsAffx.15272.1.S1_at

Description tigr:9634.m00460
TID=OsAffx.15272.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to probable wrky transcription factor 72 (wrky dna-binding protein 72). (mouse-ear cress
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0538011/11WRKY DNA binding domain containing protein, expressed
LOC_Os02g290301/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05350Os.8272.1.S1_s_at11/116+2404458..2407318DNA-binding protein p24, putative, expressed
LOC_Os06g05359Os.50271.1.S1_at11/116+2409177..2417569NB-ARC domain containing protein, expressed
LOC_Os06g05359Os.41415.1.S1_at1/116+2409177..2417569NB-ARC domain containing protein, expressed
LOC_Os06g05368Os.27107.1.S1_at11/116+2417706..2421486expressed protein
LOC_Os06g05380OsAffx.15272.1.S1_at11/116+2427026..2432255WRKY DNA binding domain containing protein, expressed
LOC_Os06g05380Os.12084.1.S1_at1/116+2427026..2432255WRKY DNA binding domain containing protein, expressed
LOC_Os06g05390Os.27510.1.A1_at11/116+2432466..2436337expressed protein
LOC_Os06g05400Os.53135.1.S1_at10/116+2436600..2438808expressed protein
LOC_Os06g05410Os.10862.1.S1_at11/116+2440704..2441550expressed protein
LOC_Os06g05420Os.50399.1.S1_at11/116+2448206..2448823expressed protein
LOC_Os06g05430Os.50383.1.S1_at11/116+2452482..2453047expressed protein
LOC_Os06g05430OsAffx.4731.1.S1_s_at11/116+2452482..2453047expressed protein
LOC_Os06g05440Os.10736.1.S1_at11/116+2456359..2457127expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15272.1.S1_at--38--7051Chr06:2431669..2431693 (25 bp)
GTAACAGGTTCTCGCACACCAGGTA
LOC_Os06g05380
OsAffx.15272.1.S1_at--574--9411Chr06:2431812..2431836 (25 bp)
TCGTCGTCGTTCGAGGCTGCGCTGA
LOC_Os06g05380
OsAffx.15272.1.S1_at--586--10631Chr06:2431821..2431845 (25 bp)
TTCGAGGCTGCGCTGAGCAGCATCA
LOC_Os06g05380
OsAffx.15272.1.S1_at--922--5052Chr06:2431837..2431861 (25 bp)
GCAGCATCAACGGAAGCAGGCAGCA
LOC_Os06g05380
OsAffx.15272.1.S1_at--351--3771Chr06:2431896..2431920 (25 bp)
CTCTACCAGATGCAGCAGAAGGCGG
LOC_Os06g05380
OsAffx.15272.1.S1_at--1147--4651Chr06:2431945..2431969 (25 bp)
GCGTGATCACCGACACGATCGCGAA
LOC_Os06g05380
OsAffx.15272.1.S1_at--964--8471Chr06:2432005..2432029 (25 bp)
TGGCGGCCGCCATCACGTCGTACGT
LOC_Os06g05380
OsAffx.15272.1.S1_at--390--1591Chr06:2432154..2432178 (25 bp)
AGCTCGAGCAGCCAGATGTTCTTGC
LOC_Os06g05380
OsAffx.15272.1.S1_at--149--1311Chr06:2432167..2432191 (25 bp)
AGATGTTCTTGCAGCCATCGCTGGG
LOC_Os06g05380
OsAffx.15272.1.S1_at--297--10431Chr06:2432193..2432217 (25 bp)
TTATCAGGATCGACGACGAGTGCGT
LOC_Os06g05380
OsAffx.15272.1.S1_at--616--1871Chr06:2432208..2432232 (25 bp)
ACGAGTGCGTCGACGTCTCCTGTGG
LOC_Os06g05380
Target Sequence 
GTAACAGGTTCTCGCACACCAGGTACCCTTCCACCGGCTTCACCTTCTCCGGCTCCGGCCCGAGTAGCGCGCCATGGCCG
GGGTACTTGAGCTACGGGGGCGTCGCTATCCGCTCACCCGTACAACGCCGGCGGCGGCAAGAGCTCGTCGTCGTTCGAGG
CTGCGCTGAGCAGCATCAACGGAAGCAGGCAGCAGGGCGGCGGCGGCGGTGGCGGCTCGGCGCCGCCGCTCTACCAGATG
CAGCAGAAGGCGGCGGCGGCGGCGCCGCCGCCGCCGAGCGTGATCACCGACACGATCGCGAAGGCGATCACGGCGGACCC
GAGCTTCCACACGGCGCTGGCGGCCGCCATCACGTCGTACGTCGGCAAGAAGGGCTCGCCGCCGGCGTCGGGAGGAGAGG
ACAGCAAGGTCGGGCTCAAGTGGGGGGAGCACCTCGGGCTCGGGCTGACCCACTCGTCGCTGTCGACGGCGGCGGCGGCG
GCGGCGAGCTCGAGCAGCCAGATGTTCTTGCAGCCATCGCTGGGGTTATCAGGATCGACGACGAGTGCGTCGACGTCTCC
TGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15272.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis