Browse Element(s) Details


Os.50271.1.S1_at

Description gb:AK120452.1
DB_XREF= gi:37990075
TID=Os.50271.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50271 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013103K24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013103K24, full insert sequence.
FL= gb:AK120452.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0535911/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05300OsAffx.27462.1.S1_at11/116+2383314..2385241Transferase family protein
LOC_Os06g05310OsAffx.27463.1.S1_x_at11/116+2386399..2389053Transferase family protein, expressed
LOC_Os06g05310OsAffx.10727.1.S1_x_at1/116+2386399..2389053Transferase family protein, expressed
LOC_Os06g05320Os.54614.1.S1_at11/116+2393822..2395563Transferase family protein, expressed
LOC_Os06g05320OsAffx.27463.1.S1_x_at2/116+2393822..2395563Transferase family protein, expressed
LOC_Os06g05330OsAffx.28190.1.S1_at3/116+2397357..2397813hypothetical protein
LOC_Os06g05340OsAffx.4729.1.S1_x_at11/116+2398692..2401591activator of sporamin LUC 1, putative
LOC_Os06g05340OsAffx.4729.1.S1_at11/116+2398692..2401591activator of sporamin LUC 1, putative
LOC_Os06g05350Os.8272.1.S1_s_at11/116+2404458..2407318DNA-binding protein p24, putative, expressed
LOC_Os06g05359Os.50271.1.S1_at11/116+2409177..2417569NB-ARC domain containing protein, expressed
LOC_Os06g05359Os.41415.1.S1_at1/116+2409177..2417569NB-ARC domain containing protein, expressed
LOC_Os06g05368Os.27107.1.S1_at11/116+2417706..2421486expressed protein
LOC_Os06g05380OsAffx.15272.1.S1_at11/116+2427026..2432255WRKY DNA binding domain containing protein, expressed
LOC_Os06g05380Os.12084.1.S1_at1/116+2427026..2432255WRKY DNA binding domain containing protein, expressed
LOC_Os06g05390Os.27510.1.A1_at11/116+2432466..2436337expressed protein
LOC_Os06g05400Os.53135.1.S1_at10/116+2436600..2438808expressed protein
LOC_Os06g05410Os.10862.1.S1_at11/116+2440704..2441550expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50271.1.S1_at--571--231Chr06:2416999..2417023 (25 bp)
ATATTTGGGCCCGTATTCATCTCAA
LOC_Os06g05359
Os.50271.1.S1_at--466--10211Chr06:2417012..2417036 (25 bp)
TATTCATCTCAAGGGCTAGTCGCAC
LOC_Os06g05359
Os.50271.1.S1_at--948--10691Chr06:2417099..2417123 (25 bp)
TTGCGTCCTCTGTGACCAACAAGAA
LOC_Os06g05359
Os.50271.1.S1_at--619--7511Chr06:2417180..2417204 (25 bp)
GTGGATCATCCTCATTGCAGTTGGC
LOC_Os06g05359
Os.50271.1.S1_at--189--6611Chr06:2417199..2417223 (25 bp)
GTTGGCCAACTTCGTTGTTTTCACA
LOC_Os06g05359
Os.50271.1.S1_at--492--2231Chr06:2417221..2417245 (25 bp)
ACAATCCTTCTTCATCCTATGGTGG
LOC_Os06g05359
Os.50271.1.S1_at--1071--6391Chr06:2417261..2417285 (25 bp)
GATCGTCATCCTAATAGCCTAGTCT
LOC_Os06g05359
Os.50271.1.S1_at--455--2791Chr06:2417385..2417409 (25 bp)
AAGAGGGTCATGTCCTAGTCGCATA
LOC_Os06g05359
Os.50271.1.S1_at--1160--10051Chr06:2417400..2417424 (25 bp)
TAGTCGCATATTCATCCCGCGAGAA
LOC_Os06g05359
Os.50271.1.S1_at--1002--1471Chr06:2417421..2417445 (25 bp)
AGAATTAGCCTATCCTTTTGCCTAG
LOC_Os06g05359
Os.50271.1.S1_at--797--231Chr06:2417479..2417503 (25 bp)
ATATTTCTTGTTGTTTGTGCGCTGA
LOC_Os06g05359
Target Sequence 
ATATTTGGGCCCGTATTCATCTCAAGGGCTAGTCGCACAGCCCCAAGTGCAGCATTGCAAGTACTTTTCTTGTTGCAAGC
GAGGACTACCTCACCCGAGTTTGCGTCCTCTGTGACCAACAAGAAGAAACAATCGATCACATCCTAATTATAATTTGCTG
TCCGGAAGCACTTCAACTTTGGTGGATCATCCTCATTGCAGTTGGCCAACTTCGTTGTTTTCACAATCCTTCTTCATCCT
ATGGTGGTGTGACAACGGGAATGATCGTCATCCTAATAGCCTAGTCTATTTTGAAGGAAAGAAACAACAGTGTTTTCAAC
AATATAAGAGCAAATCCTGGGCAGAAGTGGCTGCCGCTGCTGCAGCAGAACTGAAGAAGCAGCAGTAAGAGGGTCATGTC
CTAGTCGCATATTCATCCCGCGAGAATTAGCCTATCCTTTTGCCTAGCCTTTTTTGTTCCTTTTATTTCTTTATATTTAC
ATATTTCTTGTTGTTTGTGCGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50271.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis