Browse Element(s) Details


Os.12084.1.S1_at

Description gb:AK120450.1
DB_XREF= gi:37990073
TID=Os.12084.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12084 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-046-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013102L08, full insert sequence.
FL= gb:AK062186.1 gb:AK120450.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g053801/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05350Os.8272.1.S1_s_at11/116+2404458..2407318DNA-binding protein p24, putative, expressed
LOC_Os06g05359Os.50271.1.S1_at11/116+2409177..2417569NB-ARC domain containing protein, expressed
LOC_Os06g05359Os.41415.1.S1_at1/116+2409177..2417569NB-ARC domain containing protein, expressed
LOC_Os06g05368Os.27107.1.S1_at11/116+2417706..2421486expressed protein
LOC_Os06g05380OsAffx.15272.1.S1_at11/116+2427026..2432255WRKY DNA binding domain containing protein, expressed
LOC_Os06g05380Os.12084.1.S1_at1/116+2427026..2432255WRKY DNA binding domain containing protein, expressed
LOC_Os06g05390Os.27510.1.A1_at11/116+2432466..2436337expressed protein
LOC_Os06g05400Os.53135.1.S1_at10/116+2436600..2438808expressed protein
LOC_Os06g05410Os.10862.1.S1_at11/116+2440704..2441550expressed protein
LOC_Os06g05420Os.50399.1.S1_at11/116+2448206..2448823expressed protein
LOC_Os06g05430Os.50383.1.S1_at11/116+2452482..2453047expressed protein
LOC_Os06g05430OsAffx.4731.1.S1_s_at11/116+2452482..2453047expressed protein
LOC_Os06g05440Os.10736.1.S1_at11/116+2456359..2457127expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12084.1.S1_at--774--932Chr06:2428725..2428745 (21 bp)
AGGAAAATGTTCTCTCTTGCTACCG
LOC_Os06g05380
Os.12084.1.S1_at--143--3631Chr02:20119349..20119373 (25 bp)
CTTGCTACCGTTTACGCAACAGTGA
NONE
Os.12084.1.S1_at--73--3091Chr02:20119323..20119347 (25 bp)
AATAATCATATCGTTTCTGCGCCCT
NONE
Os.12084.1.S1_at--120--10311Chr02:20119310..20119334 (25 bp)
TTTCTGCGCCCTGTAGACATGTCAG
NONE
Os.12084.1.S1_at--169--2051Chr02:20119221..20119245 (25 bp)
ACTTTACTTTTATTTCTGCCAGAGG
NONE
Os.12084.1.S1_at--370--8291Chr02:20119198..20119222 (25 bp)
GGCATTGAACTCTCTACATCTGGGT
NONE
Os.12084.1.S1_at--740--4731Chr02:20119093..20119117 (25 bp)
GCTGTCATTTGCCTTTTCCATATTG
NONE
Os.12084.1.S1_at--787--10291Chr02:20119079..20119103 (25 bp)
TTTCCATATTGCTTCTGTCTTGTTT
NONE
Os.12084.1.S1_at--603--8731NONE
TGTCTTGTTTTTTGCACGTCTGCCA
NONE
Os.12084.1.S1_at--371--7171NONE
GTCTGCCACTGTCTGGATTTGTGTA
NONE
Os.12084.1.S1_at--1027--2331NONE
AAACCCCGAGCTGGCAATAACGATT
NONE
Target Sequence 
AGGAAAATGTTCTCTCTTGCTACCGTTTACGCAACAGTGAGAATAATCATATCGTTTCTGCGCCCTGTAGACATGTCAGG
TGCTTAATATCTGTAAGAAAAAAAGTTTTGCCTGTCGGATAATACGACAGTTTTTCAACCNCCACTTTACTTTTATTTCT
GCCAGAGGCATTGAACTCTCTACATCTGGGTTCNTACTGCGTTATTGGCTCNTGCTTTTTNCCCTTTCGGTTCATAATTG
ATATATCCCCAGATTGTGAATGAGCACGGNAATGCTGTCATTTGCCTTTTCCATATTGCTTCTGTCTTGTTTTTTGCACG
TCTGCCACTGTCTGGATTTGTGTACCGGGTTAAAAAAACCCCGAGCTGGCAATAACGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12084.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis