Browse Element(s) Details


Os.53135.1.S1_at

Description gb:AK070964.1
DB_XREF= gi:32980987
TID=Os.53135.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53135 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023067D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023067D06, full insert sequence.
FL= gb:AK070964.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0540010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05359Os.50271.1.S1_at11/116+2409177..2417569NB-ARC domain containing protein, expressed
LOC_Os06g05359Os.41415.1.S1_at1/116+2409177..2417569NB-ARC domain containing protein, expressed
LOC_Os06g05368Os.27107.1.S1_at11/116+2417706..2421486expressed protein
LOC_Os06g05380OsAffx.15272.1.S1_at11/116+2427026..2432255WRKY DNA binding domain containing protein, expressed
LOC_Os06g05380Os.12084.1.S1_at1/116+2427026..2432255WRKY DNA binding domain containing protein, expressed
LOC_Os06g05390Os.27510.1.A1_at11/116+2432466..2436337expressed protein
LOC_Os06g05400Os.53135.1.S1_at10/116+2436600..2438808expressed protein
LOC_Os06g05410Os.10862.1.S1_at11/116+2440704..2441550expressed protein
LOC_Os06g05420Os.50399.1.S1_at11/116+2448206..2448823expressed protein
LOC_Os06g05430Os.50383.1.S1_at11/116+2452482..2453047expressed protein
LOC_Os06g05430OsAffx.4731.1.S1_s_at11/116+2452482..2453047expressed protein
LOC_Os06g05440Os.10736.1.S1_at11/116+2456359..2457127expressed protein
LOC_Os06g05450Os.51845.1.S1_x_at11/116+2460056..2461959expressed protein
LOC_Os06g05450Os.23578.1.S1_at11/116+2460056..2461959expressed protein
LOC_Os06g05460NANA6+2463761..2468028retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016226biological_processiron-sulfur cluster assembly
GO:0009570cellular_componentchloroplast stroma
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53135.1.S1_at--902--2491Chr06:2437453..2437477 (25 bp)
AACATCTGGTAGCATTGCACCTGCA
LOC_Os06g05400
Os.53135.1.S1_at--739--9031Chr06:2437438..2437462 (25 bp)
TGCACCTGCAATTTCATTGACTGAA
LOC_Os06g05400
Os.53135.1.S1_at--779--6271Chr06:2437334..2437358 (25 bp)
GATGTTCTGGCATGTCTTACACCAT
LOC_Os06g05400
Os.53135.1.S1_at--359--10751Chr06:2437304..2437328 (25 bp)
TTGAAGATCGATCCAATGCCAGCCC
LOC_Os06g05400
Os.53135.1.S1_at--410--591Chr06:2437289..2437313 (25 bp)
ATGCCAGCCCTGATGATTCAGTTGT
LOC_Os06g05400
Os.53135.1.S1_at--155--271Chr06:2437266..2437285 (20 bp)
ATATGATGGCTTTGCAATAGTCTGC
LOC_Os06g05400
Os.53135.1.S1_at--115--3091Chr06:2436944..2436965 (22 bp)
AATAGTCTGCGACCCGAAGAGCCTT
LOC_Os06g05400
Os.53135.1.S1_at--1052--5351Chr06:2436929..2436953 (25 bp)
GAAGAGCCTTCTTTTCATGTTTGGA
LOC_Os06g05400
Os.53135.1.S1_at--900--1611Chr06:2436900..2436924 (25 bp)
AGCTGGACTACAGTGACGCCCTTAT
LOC_Os06g05400
Os.53135.1.S1_at--1028--4431NONE
GCCATATATATAGCTCACCCTTGAC
NONE
Os.53135.1.S1_at--457--7431Chr06:2436643..2436667 (25 bp)
GTGTATCACTGTATCCAATTGGACA
LOC_Os06g05400
Target Sequence 
AACATCTGGTAGCATTGCACCTGCAATTTCATTGACTGAAAAGGCTTTGAAGCATCTGAATAAAATGAGGGCTGAACGGA
ATGAAGATCTCTGTTTGAGAATTGGAGTTAGGCAAGGTGGATGTTCTGGCATGTCTTACACCATGGAGTTTGAAGATCGA
TCCAATGCCAGCCCTGATGATTCAGTTGTAGAATATGATGGCTTTGCAATAGTCTGCGACCCGAAGAGCCTTCTTTTCAT
GTTTGGAATGGAGCTGGACTACAGTGACGCCCTTATCGGTGGNGGATTCGNCTTCCAGAANCCAAATGCANCAAAGACAT
GTGGGTGTGGCAAATCTTNNNCCACCGGAAAAGAAACAGAGAGCACAGCAACAGCCTGCAACAACTAAGCTAGAAACATA
TAGGTGGAAATGCCATATATATAGCTCACCCTTGACAAAATGTTCTATGGATATACCACAGATGAATACTCGAAACTCAG
AAGTGTAACGATTTTCATTACAGTTTGTGTGTATCACTGTATCCAATTGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53135.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis