Browse Element(s) Details


Os.23578.1.S1_at

Description gb:AK070059.1
DB_XREF= gi:32980083
TID=Os.23578.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23578 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023042A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042A02, full insert sequence.
FL= gb:AK070059.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0545011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05390Os.27510.1.A1_at11/116+2432466..2436337expressed protein
LOC_Os06g05400Os.53135.1.S1_at10/116+2436600..2438808expressed protein
LOC_Os06g05410Os.10862.1.S1_at11/116+2440704..2441550expressed protein
LOC_Os06g05420Os.50399.1.S1_at11/116+2448206..2448823expressed protein
LOC_Os06g05430Os.50383.1.S1_at11/116+2452482..2453047expressed protein
LOC_Os06g05430OsAffx.4731.1.S1_s_at11/116+2452482..2453047expressed protein
LOC_Os06g05440Os.10736.1.S1_at11/116+2456359..2457127expressed protein
LOC_Os06g05450Os.51845.1.S1_x_at11/116+2460056..2461959expressed protein
LOC_Os06g05450Os.23578.1.S1_at11/116+2460056..2461959expressed protein
LOC_Os06g05460NANA6+2463761..2468028retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g05470Os.57191.1.S1_at11/116+2471739..2472387expressed protein
LOC_Os06g05480Os.5525.1.S1_at11/116+2476594..2477395expressed protein
LOC_Os06g05490NANA6+2481600..2482289hypothetical protein
LOC_Os06g05500NANA6+2483788..2492292transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23578.1.S1_at--745--3831Chr06:2461361..2461385 (25 bp)
CTGCTGTTCTGGTGCTTGCAGCAAT
LOC_Os06g05450
Os.23578.1.S1_at--1089--9551Chr06:2461467..2461491 (25 bp)
TCTTCTCATGGCGAGTTTCAGCGTT
LOC_Os06g05450
Os.23578.1.S1_at--342--6071Chr06:2461479..2461503 (25 bp)
GAGTTTCAGCGTTGATGCCGTGGCC
LOC_Os06g05450
Os.23578.1.S1_at--1083--4471Chr06:2461514..2461538 (25 bp)
GCCGTTTGGTTGATGGCTGCGTCCA
LOC_Os06g05450
Os.23578.1.S1_at--925--6551Chr06:2461551..2461575 (25 bp)
GATTCTACACACTGTTCCTTTGGTC
LOC_Os06g05450
Os.23578.1.S1_at--30--9251Chr06:2461566..2461590 (25 bp)
TCCTTTGGTCTGGTCGGCAGTAGAT
LOC_Os06g05450
Os.23578.1.S1_at--378--7111Chr06:2461610..2461634 (25 bp)
GTCAGATAAAACTTCCAAACGGTGT
LOC_Os06g05450
Os.23578.1.S1_at--505--9691Chr06:2461651..2461675 (25 bp)
TCAAAAGCTCCATACGTACGTGCTG
LOC_Os06g05450
Os.23578.1.S1_at--163--10471Chr06:2461697..2461721 (25 bp)
TTACCCAACCTAACAAACAGCAGTG
LOC_Os06g05450
Os.23578.1.S1_at--925--6491Chr06:2461773..2461797 (25 bp)
GATAGTTGAACTGTACCTTGACAAA
LOC_Os06g05450
Os.23578.1.S1_at--32--7411Chr06:2461881..2461905 (25 bp)
GTGATCATGTCCTATACTTTATATG
LOC_Os06g05450
Target Sequence 
CTGCTGTTCTGGTGCTTGCAGCAATACGAGAGGGCGCCGGCGAACTCACCGGCGAAATCTCGCTCCAAGGCCGGCGTCTG
GTTCTCCTCGTCTCTCCTCACGGTTGTCTTCTCATGGCGAGTTTCAGCGTTGATGCCGTGGCCTGTGGCAGCCGCCGTTT
GGTTGATGGCTGCGTCCACGGTGGTTGGAGGATTCTACACACTGTTCCTTTGGTCTGGTCGGCAGTAGATGGAAGAATAT
ATATATCNCGTCAGATAAAACTTCCAAACGGTGTTTGATTATTTGTAGCTTCAAAAGCTCCATACGTACGTGCTGNTTGG
CGGCAAAAGGTTTACGTTACCCAACCTAACAAACAGCAGTGTTTATTTGTGATACCTTAATTCATATTGTTGGAAAGTAC
CAAAAAAACATAGATAGTTGAACTGTACCTTGACAAATGATGTAAAAACATGGTGTTGTAAACCTCTAGATTATTACTAT
TGTTTTTTGTGTTTTTCTTTTACAGTATAGTCTATTAGATGTGATCATGTCCTATACTTTATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23578.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis