Browse Element(s) Details


Os.5525.1.S1_at

Description gb:AU172410
DB_XREF= gi:12622197
DB_XREF=AU172410
CLONE=C63940
TID=Os.5525.1
CNT=15
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.5525 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039G07, full insert sequence
FL= gb:AK120956.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0548011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05430Os.50383.1.S1_at11/116+2452482..2453047expressed protein
LOC_Os06g05430OsAffx.4731.1.S1_s_at11/116+2452482..2453047expressed protein
LOC_Os06g05440Os.10736.1.S1_at11/116+2456359..2457127expressed protein
LOC_Os06g05450Os.51845.1.S1_x_at11/116+2460056..2461959expressed protein
LOC_Os06g05450Os.23578.1.S1_at11/116+2460056..2461959expressed protein
LOC_Os06g05460NANA6+2463761..2468028retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g05470Os.57191.1.S1_at11/116+2471739..2472387expressed protein
LOC_Os06g05480Os.5525.1.S1_at11/116+2476594..2477395expressed protein
LOC_Os06g05490NANA6+2481600..2482289hypothetical protein
LOC_Os06g05500NANA6+2483788..2492292transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g05510Os.55293.1.S1_at10/116+2496635..2497203expressed protein
LOC_Os06g05520OsAffx.15273.1.S1_at11/116+2497864..2501888Protein kinase domain containing protein, expressed
LOC_Os06g05520Os.8016.1.S1_a_at11/116+2497864..2501888Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5525.1.S1_at--583--8651Chr06:2477228..2477252 (25 bp)
TGGGCGTCCCTGATCGGCTTCGTCG
LOC_Os06g05480
Os.5525.1.S1_at--775--4131Chr06:2477185..2477209 (25 bp)
CGCTCTGCATCTACCGCGCGGAAGG
LOC_Os06g05480
Os.5525.1.S1_at--460--8611Chr06:2477102..2477126 (25 bp)
TGGTGCATCCGCCAGTTCGATCAGG
LOC_Os06g05480
Os.5525.1.S1_at--1105--7471Chr06:2476931..2476955 (25 bp)
GTGGTCGGTGGATTCTACGGCTTCT
LOC_Os06g05480
Os.5525.1.S1_at--76--6571Chr06:2476921..2476945 (25 bp)
GATTCTACGGCTTCTTCATCCATGA
LOC_Os06g05480
Os.5525.1.S1_at--936--3531Chr06:2476905..2476929 (25 bp)
CATCCATGAGGACAAGTGATCGATC
LOC_Os06g05480
Os.5525.1.S1_at--637--2331Chr06:2476845..2476869 (25 bp)
AAAGATTACTGCTCCATTGGGTCTA
LOC_Os06g05480
Os.5525.1.S1_at--574--8631Chr06:2476828..2476852 (25 bp)
TGGGTCTACTGCTTTTATGGCTTCA
LOC_Os06g05480
Os.5525.1.S1_at--508--851Chr06:2476812..2476836 (25 bp)
ATGGCTTCAGGTTGTATATCGGTCA
LOC_Os06g05480
Os.5525.1.S1_at--425--7911Chr06:2476772..2476796 (25 bp)
GGTTGATATCGACTCGATCGCCGGA
LOC_Os06g05480
Os.5525.1.S1_at--485--9391Chr06:2476759..2476783 (25 bp)
TCGATCGCCGGATGCACTGTGAGAG
LOC_Os06g05480
Target Sequence 
TGGGCGTCCCTGATCGGCTTCGTCGCCCTCGCCNTCAACTTCGCGCTCTGCATCTACCGCGCGGAAGGGGATCGCGGCGC
GATCGCNTTNGTCACCTTCGCCTATCTCAACCTGCTGCTCCTCTTCTGGTGCATCCGCCAGTTCGATCAGGCGCCGCACG
GATCGGCGGCGAGGGGCCGGATCAGGGCCGCCGTCTGGATCCTCGCCACATCGCTCACCGCCGTCTTTACNTGGAAGGTG
NCGGCGCTGATGCCGCTCCCCGTCGCCGCCGTGGCGTGGGTCATGGCCGCGGCCACCGTGGTCGGTGGATTCTACGGCTT
CTTCATCCATGAGGACAAGTGATCGATCGATCCANGATCGGATGATCAAATCGCAAAATCGGAAAAGATTACTGCTCCAT
TGGGTCTACTGCTTTTATGGCTTCAGGTTGTATATCGGTCAGGTTAATTANTGTGGTGGTTGATATCGACTCGATCGCCG
GATGCACTGTGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5525.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis