Browse Element(s) Details


Os.57191.1.S1_at

Description gb:AK111114.1
DB_XREF= gi:32996323
TID=Os.57191.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57191 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-B05, full insert sequence.
FL= gb:AK111114.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0547011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05420Os.50399.1.S1_at11/116+2448206..2448823expressed protein
LOC_Os06g05430Os.50383.1.S1_at11/116+2452482..2453047expressed protein
LOC_Os06g05430OsAffx.4731.1.S1_s_at11/116+2452482..2453047expressed protein
LOC_Os06g05440Os.10736.1.S1_at11/116+2456359..2457127expressed protein
LOC_Os06g05450Os.51845.1.S1_x_at11/116+2460056..2461959expressed protein
LOC_Os06g05450Os.23578.1.S1_at11/116+2460056..2461959expressed protein
LOC_Os06g05460NANA6+2463761..2468028retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g05470Os.57191.1.S1_at11/116+2471739..2472387expressed protein
LOC_Os06g05480Os.5525.1.S1_at11/116+2476594..2477395expressed protein
LOC_Os06g05490NANA6+2481600..2482289hypothetical protein
LOC_Os06g05500NANA6+2483788..2492292transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g05510Os.55293.1.S1_at10/116+2496635..2497203expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57191.1.S1_at--54--8511Chr06:2471815..2471839 (25 bp)
TGGCATCAGAAGCTGCTACGACCTG
LOC_Os06g05470
Os.57191.1.S1_at--303--9091Chr06:2471828..2471852 (25 bp)
TGCTACGACCTGCATCGGGTTTATC
LOC_Os06g05470
Os.57191.1.S1_at--875--9691Chr06:2471857..2471881 (25 bp)
TCACAGCAAGCTCGATCGCTGCGAT
LOC_Os06g05470
Os.57191.1.S1_at--374--9151Chr06:2471876..2471900 (25 bp)
TGCGATCCACAGGTCACACGGAGAA
LOC_Os06g05470
Os.57191.1.S1_at--92--5591Chr06:2471898..2471922 (25 bp)
GAAATCACCGAGACGTCGTTCATCG
LOC_Os06g05470
Os.57191.1.S1_at--406--9391Chr06:2471913..2471937 (25 bp)
TCGTTCATCGTCGTGTCGTACCTCA
LOC_Os06g05470
Os.57191.1.S1_at--195--4391Chr06:2472010..2472034 (25 bp)
CCAAGGCCGGCGTATGGGTCGTCAC
LOC_Os06g05470
Os.57191.1.S1_at--519--10591Chr06:2472054..2472078 (25 bp)
TTCTCGTGGAGGGTTTCCGCGCTCA
LOC_Os06g05470
Os.57191.1.S1_at--753--4251Chr06:2472081..2472105 (25 bp)
CCGTGGCCGGTGGATGCGATTATTT
LOC_Os06g05470
Os.57191.1.S1_at--43--171Chr06:2472099..2472123 (25 bp)
ATTATTTGGGTGATGGCCGCCTCAA
LOC_Os06g05470
Os.57191.1.S1_at--980--3551Chr06:2472156..2472180 (25 bp)
CATCATCCCGGCGTAGACTGAAAAT
LOC_Os06g05470
Target Sequence 
TGGCATCAGAAGCTGCTACGACCTGCATCGGGTTTATCCTCCTCACAGCAAGCTCGATCGCTGCGATCCACAGGTCACAC
GGAGAAATCACCGAGACGTCGTTCATCGTCGTGTCGTACCTCAGCCTTGTGCTGCTCTTCGTGTTCCTCCGCCGCTTCGA
GGCGGCGCCGCGGAATTCGCCGGCGAGGGGCGGCGCCAAGGCCGGCGTATGGGTCGTCACGGCGCTGCTCGCCGCGGTGT
TCTCGTGGAGGGTTTCCGCGCTCATGCCGTGGCCGGTGGATGCGATTATTTGGGTGATGGCCGCCTCAACTGTTCTTGGG
GGATTCTACGCCTTGTTCCTTCATCATCCCGGCGTAGACTGAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57191.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis