Browse Element(s) Details


Os.50399.1.S1_at

Description gb:AK121050.1
DB_XREF= gi:37990673
TID=Os.50399.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50399 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023055G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023055G07, full insert sequence.
FL= gb:AK121050.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0542011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05380OsAffx.15272.1.S1_at11/116+2427026..2432255WRKY DNA binding domain containing protein, expressed
LOC_Os06g05380Os.12084.1.S1_at1/116+2427026..2432255WRKY DNA binding domain containing protein, expressed
LOC_Os06g05390Os.27510.1.A1_at11/116+2432466..2436337expressed protein
LOC_Os06g05400Os.53135.1.S1_at10/116+2436600..2438808expressed protein
LOC_Os06g05410Os.10862.1.S1_at11/116+2440704..2441550expressed protein
LOC_Os06g05420Os.50399.1.S1_at11/116+2448206..2448823expressed protein
LOC_Os06g05430Os.50383.1.S1_at11/116+2452482..2453047expressed protein
LOC_Os06g05430OsAffx.4731.1.S1_s_at11/116+2452482..2453047expressed protein
LOC_Os06g05440Os.10736.1.S1_at11/116+2456359..2457127expressed protein
LOC_Os06g05450Os.51845.1.S1_x_at11/116+2460056..2461959expressed protein
LOC_Os06g05450Os.23578.1.S1_at11/116+2460056..2461959expressed protein
LOC_Os06g05460NANA6+2463761..2468028retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g05470Os.57191.1.S1_at11/116+2471739..2472387expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50399.1.S1_at--820--6551Chr06:2448748..2448772 (25 bp)
GATTAACCATTATTTCGACGGGCCA
LOC_Os06g05420
Os.50399.1.S1_at--373--5591Chr06:2448706..2448730 (25 bp)
GAAATCCATCTCTATTTCAGCCCAA
LOC_Os06g05420
Os.50399.1.S1_at--492--831Chr06:2448673..2448697 (25 bp)
ATGGATATGGATCGCCACGGAGCCC
LOC_Os06g05420
Os.50399.1.S1_at--935--7671Chr06:2448637..2448661 (25 bp)
GGGTTCGGAGCACTAACATTCAACT
LOC_Os06g05420
Os.50399.1.S1_at--209--2551Chr06:2448616..2448640 (25 bp)
AACTCCGCGCTTGCAATATACCGAT
LOC_Os06g05420
Os.50399.1.S1_at--1025--6851Chr06:2448469..2448493 (25 bp)
GTTTGGGTGCTGACGACCCTACTGA
LOC_Os06g05420
Os.50399.1.S1_at--889--7231Chr06:2448400..2448424 (25 bp)
GTCGCCTTCGTTGTCTGGGTCATGG
LOC_Os06g05420
Os.50399.1.S1_at--878--1891Chr06:2448367..2448391 (25 bp)
ACGTCGGTTGCTGGATTCTGGGCTT
LOC_Os06g05420
Os.50399.1.S1_at--152--3851Chr06:2448329..2448353 (25 bp)
CTGAGATCCAAGAGCGCACTGTAGA
LOC_Os06g05420
Os.50399.1.S1_at--550--6891Chr06:2448309..2448333 (25 bp)
GTAGATTTGTTTACGGCACGGCCTT
LOC_Os06g05420
Os.50399.1.S1_at--117--8111Chr06:2448295..2448319 (25 bp)
GGCACGGCCTTTCTTATTGTTAGTG
LOC_Os06g05420
Target Sequence 
GATTAACCATTATTTCGACGGGCCAAAAACCAAGAAGGCATAGAAATCCATCTCTATTTCAGCCCAATATACCATATGGA
TATGGATCGCCACGGAGCCCTGACCAAGCTGGGGTTCGGAGCACTAACATTCAACTCCGCGCTTGCAATATACCGATCGC
GGGGAGACCCAGCCACGGTCGCGTTCGTGGCCGGCGCGTACGCGGCCATCGTTCTGCTCTTCTATTTCCTCCTCCGGTTT
GAGCGACGACGGGATGACAGGGGGAGGACCAAGGTCGTGGTTTGGGTGCTGACGACCCTACTGACCGCGATGTTTGCAGC
GAGGGTGGCTCCGCTTATGCCGCCGCTCGTCGCCTTCGTTGTCTGGGTCATGGCGGCTGGGACGTCGGTTGCTGGATTCT
GGGCTTTTTTTTCTCAACCTCTGAGATCCAAGAGCGCACTGTAGATTTGTTTACGGCACGGCCTTTCTTATTGTTAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50399.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis