Browse Element(s) Details

Os.10862.1.S1_at

Description

gb:CF340108
DB_XREF= gi:33828576
DB_XREF=RCL1--06-P14.g1
CLONE=RCL1--06-P14
TID=Os.10862.1
CNT=19
FEA=FLmRNA
TIER=Stack
STK=10
UG=Os.10862 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033064J17, full insert sequence
FL= gb:AK121663.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g05410	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g05359	Os.50271.1.S1_at	11/11	6	+	2409177..2417569	NB-ARC domain containing protein, expressed
LOC_Os06g05359	Os.41415.1.S1_at	1/11	6	+	2409177..2417569	NB-ARC domain containing protein, expressed
LOC_Os06g05368	Os.27107.1.S1_at	11/11	6	+	2417706..2421486	expressed protein
LOC_Os06g05380	OsAffx.15272.1.S1_at	11/11	6	+	2427026..2432255	WRKY DNA binding domain containing protein, expressed
LOC_Os06g05380	Os.12084.1.S1_at	1/11	6	+	2427026..2432255	WRKY DNA binding domain containing protein, expressed
LOC_Os06g05390	Os.27510.1.A1_at	11/11	6	+	2432466..2436337	expressed protein
LOC_Os06g05400	Os.53135.1.S1_at	10/11	6	+	2436600..2438808	expressed protein
LOC_Os06g05410	Os.10862.1.S1_at	11/11	6	+	2440704..2441550	expressed protein
LOC_Os06g05420	Os.50399.1.S1_at	11/11	6	+	2448206..2448823	expressed protein
LOC_Os06g05430	Os.50383.1.S1_at	11/11	6	+	2452482..2453047	expressed protein
LOC_Os06g05430	OsAffx.4731.1.S1_s_at	11/11	6	+	2452482..2453047	expressed protein
LOC_Os06g05440	Os.10736.1.S1_at	11/11	6	+	2456359..2457127	expressed protein
LOC_Os06g05450	Os.51845.1.S1_x_at	11/11	6	+	2460056..2461959	expressed protein
LOC_Os06g05450	Os.23578.1.S1_at	11/11	6	+	2460056..2461959	expressed protein
LOC_Os06g05460	NA	NA	6	+	2463761..2468028	retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.10862.1.S1_at--1106--637	1	Chr06:2441404..2441428 (25 bp)	GATCGCTTTCGTGGCGACCAGCTAC	LOC_Os06g05410
Os.10862.1.S1_at--885--865	1	Chr06:2441297..2441321 (25 bp)	TGTGGTATATTTGCACCGTCGTTAC	LOC_Os06g05410
Os.10862.1.S1_at--1--677	1	Chr06:2441277..2441301 (25 bp)	GTTACCACGCTGTTCGCCTGGAAGG	LOC_Os06g05410
Os.10862.1.S1_at--305--453	1	Chr06:2441159..2441183 (25 bp)	GCCGCCGTCCATGATTAGTTTAGTA	LOC_Os06g05410
Os.10862.1.S1_at--92--681	1	Chr06:2441142..2441166 (25 bp)	GTTTAGTACTGTACGTGGCGTATCA	LOC_Os06g05410
Os.10862.1.S1_at--283--847	1	Chr06:2441127..2441151 (25 bp)	TGGCGTATCAGTCCAGTGTTGCTAC	LOC_Os06g05410
Os.10862.1.S1_at--531--741	2	Chr10:19151591..19151613 (22 bp)	GTGTTGCTACATATACGTACGTACG	NONE
Os.10862.1.S1_at--987--697	1	Chr06:2441096..2441120 (25 bp)	GTACGTACGGATCGACTTCACCCTT	LOC_Os06g05410
Os.10862.1.S1_at--461--1051	1	Chr06:2441080..2441104 (25 bp)	TTCACCCTTGCGTTGCATATTCATT	LOC_Os06g05410
Os.10862.1.S1_at--892--1061	1	Chr06:2441057..2441081 (25 bp)	TTCGATTGACGATTGGCTGTGAATT	LOC_Os06g05410
Os.10862.1.S1_at--497--765	1	Chr06:2441025..2441049 (25 bp)	GGGAGTATACATGCATCGAAAGAAT	LOC_Os06g05410

Target Sequence

GATCGCTTTCGTGGCGACCAGCTACGCCACGCTTCTCCTCCTCTTCCGTTACCTTCGCGCCTACGAGCTTGCGGCCGCCG
CGGAGAGAGAGGGGCTCAGGCGCAAGGTGTGGTATATTTGCACCGTCGTTACCACGCTGTTCGCCTGGAAGGTTGCCGGC
GTGATGCCTCCGGCCGCCGCCGCCGCCGTCTGGCTCCTCGCCGTCGCCACCTCCGCCGGTGGCTTCGTCGTCCTGTTCCA
CCACCGCCGCCGTCCATGATTAGTTTAGTACTGTACGTGGCGTATCAGTCCAGTGTTGCTACATATACGTACGTACGGAT
CGACTTCACCCTTGCGTTGCATATTCATTCGATTGACGATTGGCTGTGAATTTGTAATTGGGAGTATACATGCATCGAAA
GAAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis