Browse Element(s) Details


Os.27510.1.A1_at

Description gb:AK101052.1
DB_XREF= gi:32986261
TID=Os.27510.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27510 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033012O18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033012O18, full insert sequence.
FL= gb:AK101052.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0539011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05359Os.50271.1.S1_at11/116+2409177..2417569NB-ARC domain containing protein, expressed
LOC_Os06g05359Os.41415.1.S1_at1/116+2409177..2417569NB-ARC domain containing protein, expressed
LOC_Os06g05368Os.27107.1.S1_at11/116+2417706..2421486expressed protein
LOC_Os06g05380OsAffx.15272.1.S1_at11/116+2427026..2432255WRKY DNA binding domain containing protein, expressed
LOC_Os06g05380Os.12084.1.S1_at1/116+2427026..2432255WRKY DNA binding domain containing protein, expressed
LOC_Os06g05390Os.27510.1.A1_at11/116+2432466..2436337expressed protein
LOC_Os06g05400Os.53135.1.S1_at10/116+2436600..2438808expressed protein
LOC_Os06g05410Os.10862.1.S1_at11/116+2440704..2441550expressed protein
LOC_Os06g05420Os.50399.1.S1_at11/116+2448206..2448823expressed protein
LOC_Os06g05430Os.50383.1.S1_at11/116+2452482..2453047expressed protein
LOC_Os06g05430OsAffx.4731.1.S1_s_at11/116+2452482..2453047expressed protein
LOC_Os06g05440Os.10736.1.S1_at11/116+2456359..2457127expressed protein
LOC_Os06g05450Os.51845.1.S1_x_at11/116+2460056..2461959expressed protein
LOC_Os06g05450Os.23578.1.S1_at11/116+2460056..2461959expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27510.1.A1_at--19--9791Chr06:2433322..2433346 (25 bp)
TAACCGGTATTTGCTTGCCCGAGAA
LOC_Os06g05390
Os.27510.1.A1_at--921--9791Chr06:2433293..2433317 (25 bp)
TAAGCCGACCTGATGCAACAGACAT
LOC_Os06g05390
Os.27510.1.A1_at--595--5511Chr06:2432897..2432921 (25 bp)
GAACAATCTGACGAGGCACCATCAT
LOC_Os06g05390
Os.27510.1.A1_at--740--2971Chr06:2432859..2432883 (25 bp)
AATGGGCGTATTTAGTTCCGTGAGC
LOC_Os06g05390
Os.27510.1.A1_at--936--5951Chr06:2432785..2432809 (25 bp)
GAGAATCTTTTTGGCCATGATCCAC
LOC_Os06g05390
Os.27510.1.A1_at--26--6371Chr06:2432767..2432791 (25 bp)
GATCCACATCATCAGCGATGCTGTT
LOC_Os06g05390
Os.27510.1.A1_at--1083--6331Chr06:2432751..2432775 (25 bp)
GATGCTGTTAATCTGCAACTCCATG
LOC_Os06g05390
Os.27510.1.A1_at--437--2551Chr06:2432735..2432759 (25 bp)
AACTCCATGGGTTACTAGCTGCTAC
LOC_Os06g05390
Os.27510.1.A1_at--1051--2671Chr06:2432699..2432723 (25 bp)
AAGCGATGTCTAGTTCACGTTGCAG
LOC_Os06g05390
Os.27510.1.A1_at--764--6771Chr06:2432566..2432590 (25 bp)
GTTACATATCCTTCTGTTTCTGCAA
LOC_Os06g05390
Os.27510.1.A1_at--328--6731Chr06:2432486..2432510 (25 bp)
GTTCATTCATCTTTGGCTAACTCAA
LOC_Os06g05390
Target Sequence 
TAACCGGTATTTGCTTGCCCGAGAACTTGTAAGCCGACCTGATGCAACAGACATTGAGATAATATTTGGAGGCGGCGATG
AACAATCTGACGAGGCACCATCATTGATGAACAATGTAATGGGCGTATTTAGTTCCGTGAGCCGGTTTATGAGAGTAATC
TCCAAGTGAAAGTCTCAACCAAGCCGTTGATGAGAATCTTTTTGGCCATGATCCACATCATCAGCGATGCTGTTAATCTG
CAACTCCATGGGTTACTAGCTGCTACTGTCTACTAGCAAGCGATGTCTAGTTCACGTTGCAGGACGTGTACAAGCTACCA
AGATGTGTACTTGCACGATTGTATTGTAGATTCCTGCATCTATGAATGATCCTAAACAATGTTAGCTCCTATATAACATT
TCTGTAGATAGTTACATATCCTTCTGTTTCTGCAAATAATGAAGATCTGAATTGTACTTTCTGAGTCNCTTATTTGTCCA
TGTATCATATGTTCATTCATCTTTGGCTAACTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27510.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis