Browse Element(s) Details


OsAffx.4729.1.S1_at

Description tigr:9634.m00456
TID=OsAffx.4729.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to F20B17.12
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0534011/11activator of sporamin LUC 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05260Os.53028.1.S1_at11/116+2371993..2373947Pectate lyase precursor, putative, expressed
LOC_Os06g05260Os.1741.4.S1_x_at1/116+2371993..2373947Pectate lyase precursor, putative, expressed
LOC_Os06g05272Os.5708.1.S1_at9/116+2377130..2378274Pectate lyase precursor, putative
LOC_Os06g05272OsAffx.18481.1.S1_x_at1/116+2377130..2378274Pectate lyase precursor, putative
LOC_Os06g05284Os.5951.1.S1_at11/116+2379596..2381937Transferase family protein, expressed
LOC_Os06g05300OsAffx.27462.1.S1_at11/116+2383314..2385241Transferase family protein
LOC_Os06g05310OsAffx.27463.1.S1_x_at11/116+2386399..2389053Transferase family protein, expressed
LOC_Os06g05310OsAffx.10727.1.S1_x_at1/116+2386399..2389053Transferase family protein, expressed
LOC_Os06g05320Os.54614.1.S1_at11/116+2393822..2395563Transferase family protein, expressed
LOC_Os06g05320OsAffx.27463.1.S1_x_at2/116+2393822..2395563Transferase family protein, expressed
LOC_Os06g05330OsAffx.28190.1.S1_at3/116+2397357..2397813hypothetical protein
LOC_Os06g05340OsAffx.4729.1.S1_x_at11/116+2398692..2401591activator of sporamin LUC 1, putative
LOC_Os06g05340OsAffx.4729.1.S1_at11/116+2398692..2401591activator of sporamin LUC 1, putative
LOC_Os06g05350Os.8272.1.S1_s_at11/116+2404458..2407318DNA-binding protein p24, putative, expressed
LOC_Os06g05359Os.50271.1.S1_at11/116+2409177..2417569NB-ARC domain containing protein, expressed
LOC_Os06g05359Os.41415.1.S1_at1/116+2409177..2417569NB-ARC domain containing protein, expressed
LOC_Os06g05368Os.27107.1.S1_at11/116+2417706..2421486expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006109biological_processregulation of carbohydrate metabolism
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0008610biological_processlipid biosynthesis
GO:0009744biological_processresponse to sucrose stimulus
GO:0009887biological_processorgan morphogenesis
GO:0019432biological_processtriacylglycerol biosynthesis
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4729.1.S1_at--511--5011Chr06:2399266..2399290 (25 bp)
GCAGGGTGTTCGGCAACAAGTACCT
LOC_Os06g05340
OsAffx.4729.1.S1_at--900--2831Chr06:2399249..2399273 (25 bp)
AAGTACCTCTACCTGGGCACCTACT
LOC_Os06g05340
OsAffx.4729.1.S1_at--1040--8211Chr06:2399234..2399258 (25 bp)
GGCACCTACTCCACCCAGGAGGAGG
LOC_Os06g05340
OsAffx.4729.1.S1_at--986--4371Chr06:2399155..2399179 (25 bp)
CCAACTTCGATCTCAGCACCTACAT
LOC_Os06g05340
OsAffx.4729.1.S1_at--680--9091Chr06:2398930..2398954 (25 bp)
TGCTCCGGTCGTCGATGTTCCAGGA
LOC_Os06g05340
OsAffx.4729.1.S1_at--6--8251Chr06:2398894..2398918 (25 bp)
GGCAGCCCGTCGTGGAAGGCGACGA
LOC_Os06g05340
OsAffx.4729.1.S1_at--247--1851Chr06:2398873..2398897 (25 bp)
ACGACGGACAGTTGGCGGTGGTGTC
LOC_Os06g05340
OsAffx.4729.1.S1_at--592--9931Chr06:2398787..2398811 (25 bp)
TACGGCGAAGTGTTCGCCAGCGACG
LOC_Os06g05340
OsAffx.4729.1.S1_at--661--3931Chr06:2398747..2398771 (25 bp)
CGGCGTACGGGTGCTCCATGTACGA
LOC_Os06g05340
OsAffx.4729.1.S1_at--994--7771Chr06:2398738..2398762 (25 bp)
GGTGCTCCATGTACGAGCTGGACGA
LOC_Os06g05340
OsAffx.4729.1.S1_at--508--8751Chr06:2398729..2398753 (25 bp)
TGTACGAGCTGGACGACAGCTTCGC
LOC_Os06g05340
Target Sequence 
GCAGGGTGTTCGGCAACAAGTACCTCTACCTGGGCACCTACTCCACCCAGGAGGAGGCCGCCCGCGCCTACGACATCGCC
GCCATCGAGTACCGCGGCATCAACGCCGTCACCAACTTCGATCTCAGCACCTACATCCGCTGGCTCAAGCCCCCCTCCTC
CTCCTCCGCCGCCGGCACGCCCCACCACCACGGCGGTGGCATGGTCGTCGGCGCCGACCGCGTGCTCGCCCCGGCGCAGA
GCTACCCGATCAGCGCCGCCGCCGACGACGACGTGGCCGGCTGCTGGCGGCCGTTGCCGTCGCCGTCGTCGTCGACGACC
ACGGCGCTCAGCCTGCTGCTCCGGTCGTCGATGTTCCAGGAGCTCGTGGCGCGGCAGCCCGTCGTGGAAGGCGACGACGG
ACAGTTGGCGGTGGTGTCGGGCGACGACGCCGACGCCGACGCCGACTCCGACGTGAAGGAGCCGCCGCCGGAGAGCGAGT
ACGGCGAAGTGTTCGCCAGCGACGAGGCGGCGGCGGCGGCGGCGTACGGGTGCTCCATGTACGAGCTGGACGACAGCTTC
GC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4729.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis