Browse Element(s) Details


OsAffx.28190.1.S1_at

Description tigr:9634.m04835
TID=OsAffx.28190.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4961011/11hypothetical protein
LOC_Os06g4959011/11hypothetical protein
LOC_Os06g053303/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49540Os.14919.1.S1_at7/116+29999124..30005104transposon protein, putative, Mutator sub-class
LOC_Os06g49540Os.56216.1.S1_at2/116+29999124..30005104transposon protein, putative, Mutator sub-class
LOC_Os06g49540OsAffx.29313.1.S1_at1/116+29999124..30005104transposon protein, putative, Mutator sub-class
LOC_Os06g49550Os.30616.1.S1_s_at11/116+30007095..30009588transposon protein, putative, unclassified, expressed
LOC_Os06g49550OsAffx.28189.1.S1_at11/116+30007095..30009588transposon protein, putative, unclassified, expressed
LOC_Os06g49560OsAffx.25936.7.S1_s_at11/116+30011987..30015025transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g49560OsAffx.25936.1.S1_s_at11/116+30011987..30015025transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g49560OsAffx.25936.2.S1_x_at4/116+30011987..30015025transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g49560OsAffx.25936.5.S1_x_at2/116+30011987..30015025transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g49570NANA6+30016944..30017561hypothetical protein
LOC_Os06g49580Os.10827.1.S1_x_at10/116+30018079..30021366transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g49580Os.46055.2.S1_x_at5/116+30018079..30021366transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g49590OsAffx.28190.1.S1_at11/116+30022181..30022393hypothetical protein
LOC_Os06g49600NANA6+30022779..30023532hypothetical protein
LOC_Os06g49610OsAffx.28190.1.S1_at11/116+30025714..30025926hypothetical protein
LOC_Os06g49620OsAffx.15999.1.S1_at11/116+30027722..30028111expressed protein
LOC_Os06g49629NANA6+30032716..30032851NA
LOC_Os06g49640Os.27756.1.S1_at11/116+30033723..30036731INTEGRAL MEMBRANE PROTEIN, putative, expressed
LOC_Os06g49640OsAffx.28191.1.S1_at11/116+30033723..30036731INTEGRAL MEMBRANE PROTEIN, putative, expressed
LOC_Os06g49650Os.51281.1.S1_at11/116+30037572..30038578Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28190.1.S1_at--470--8192Chr06:30025749..30025773 (25 bp)
GGAAGACACCCATGATATAAGACGA
LOC_Os06g49610
OsAffx.28190.1.S1_at--372--5372Chr06:30025750..30025774 (25 bp)
GAAGACACCCATGATATAAGACGAT
LOC_Os06g49610
OsAffx.28190.1.S1_at--1056--5632Chr06:30025753..30025777 (25 bp)
GACACCCATGATATAAGACGATCAA
LOC_Os06g49610
OsAffx.28190.1.S1_at--64--4332Chr06:30025758..30025782 (25 bp)
CCATGATATAAGACGATCAACACGA
LOC_Os06g49610
OsAffx.28190.1.S1_at--761--6453Chr06:30025772..30025796 (25 bp)
GATCAACACGATCGACACTCACCAT
LOC_Os06g49610
OsAffx.28190.1.S1_at--643--2473Chr06:30025776..30025800 (25 bp)
AACACGATCGACACTCACCATGAAG
LOC_Os06g49610
OsAffx.28190.1.S1_at--760--2173Chr06:30025777..30025801 (25 bp)
ACACGATCGACACTCACCATGAAGA
LOC_Os06g49610
OsAffx.28190.1.S1_at--134--1893Chr06:30025779..30025803 (25 bp)
ACGATCGACACTCACCATGAAGAGA
LOC_Os06g49610
OsAffx.28190.1.S1_at--506--6396Chr06:30025781..30025805 (25 bp)
GATCGACACTCACCATGAAGAGACA
LOC_Os06g49610
OsAffx.28190.1.S1_at--640--5636Chr06:30025785..30025809 (25 bp)
GACACTCACCATGAAGAGACAATCA
LOC_Os06g49610
OsAffx.28190.1.S1_at--311--2017Chr06:30025788..30025812 (25 bp)
ACTCACCATGAAGAGACAATCAACA
LOC_Os06g49610
Target Sequence 
GGAAGACACCCATGATATAAGACGATCAACACGATCGACACTCACCATGAAGAGACAATCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28190.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis