Browse Element(s) Details

Os.27756.1.S1_at

Description

gb:AK121344.1
DB_XREF= gi:37990967
TID=Os.27756.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27756 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023121B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023121B11, full insert sequence.
FL= gb:AK121344.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g49640	11/11	INTEGRAL MEMBRANE PROTEIN, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g49550	Os.30616.1.S1_s_at	11/11	6	+	30007095..30009588	transposon protein, putative, unclassified, expressed
LOC_Os06g49550	OsAffx.28189.1.S1_at	11/11	6	+	30007095..30009588	transposon protein, putative, unclassified, expressed
LOC_Os06g49560	OsAffx.25936.7.S1_s_at	11/11	6	+	30011987..30015025	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g49560	OsAffx.25936.1.S1_s_at	11/11	6	+	30011987..30015025	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g49560	OsAffx.25936.2.S1_x_at	4/11	6	+	30011987..30015025	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g49560	OsAffx.25936.5.S1_x_at	2/11	6	+	30011987..30015025	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g49570	NA	NA	6	+	30016944..30017561	hypothetical protein
LOC_Os06g49580	Os.10827.1.S1_x_at	10/11	6	+	30018079..30021366	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g49580	Os.46055.2.S1_x_at	5/11	6	+	30018079..30021366	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g49590	OsAffx.28190.1.S1_at	11/11	6	+	30022181..30022393	hypothetical protein
LOC_Os06g49600	NA	NA	6	+	30022779..30023532	hypothetical protein
LOC_Os06g49610	OsAffx.28190.1.S1_at	11/11	6	+	30025714..30025926	hypothetical protein
LOC_Os06g49620	OsAffx.15999.1.S1_at	11/11	6	+	30027722..30028111	expressed protein
LOC_Os06g49629	NA	NA	6	+	30032716..30032851	NA
LOC_Os06g49640	Os.27756.1.S1_at	11/11	6	+	30033723..30036731	INTEGRAL MEMBRANE PROTEIN, putative, expressed
LOC_Os06g49640	OsAffx.28191.1.S1_at	11/11	6	+	30033723..30036731	INTEGRAL MEMBRANE PROTEIN, putative, expressed
LOC_Os06g49650	Os.51281.1.S1_at	11/11	6	+	30037572..30038578	Harpin-induced protein 1 containing protein, expressed
LOC_Os06g49660	OsAffx.5156.1.S1_at	11/11	6	+	30050930..30052339	Transferase family protein, expressed
LOC_Os06g49670	Os.51725.1.S1_at	11/11	6	+	30058825..30062001	pentatricopeptide, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0009706	cellular_component	chloroplast inner membrane

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.27756.1.S1_at--925--41	1	Chr06:30035342..30035366 (25 bp)	ATCATGTACTGACCTCTTCTGCTTT	LOC_Os06g49640
Os.27756.1.S1_at--787--1027	1	Chr06:30035320..30035344 (25 bp)	TTTGCAGCATCGATTTTCCTCTCTT	LOC_Os06g49640
Os.27756.1.S1_at--853--909	1	Chr06:30035280..30035304 (25 bp)	TGCTCTCCAGGCTCAGTAGCAAGTA	LOC_Os06g49640
Os.27756.1.S1_at--923--459	1	Chr06:30035240..30035264 (25 bp)	GCGACACCTGAATGGCTGGAGCACA	LOC_Os06g49640
Os.27756.1.S1_at--972--1011	1	Chr06:30035200..30035224 (25 bp)	TATGACATAGGCCTGTTGTGTTTCC	LOC_Os06g49640
Os.27756.1.S1_at--391--663	1	Chr06:30035186..30035210 (25 bp)	GTTGTGTTTCCTATGCCGTGCAACA	LOC_Os06g49640
Os.27756.1.S1_at--1042--449	1	Chr06:30035172..30035196 (25 bp)	GCCGTGCAACACCTCATGTTATGTT	LOC_Os06g49640
Os.27756.1.S1_at--564--765	1	Chr06:30035127..30035151 (25 bp)	GGGAGTTTGCACATCTCACGTACTC	LOC_Os06g49640
Os.27756.1.S1_at--611--209	1	Chr06:30035117..30035141 (25 bp)	ACATCTCACGTACTCTTTGTATGGA	LOC_Os06g49640
Os.27756.1.S1_at--926--1021	1	Chr06:30035056..30035080 (25 bp)	TATTGTCACCATCACTGTGTACCAC	LOC_Os06g49640
Os.27756.1.S1_at--282--785	1	Chr06:30035034..30035053 (20 bp)	GGTACTGCAACTCACTGCTTTTTTA	LOC_Os06g49640

Target Sequence

ATCATGTACTGACCTCTTCTGCTTTGCAGCATCGATTTTCCTCTCTTCAGCTTGCCTCTACCTGCTCTCCAGGCTCAGTA
GCAAGTAGAAAAATAGGAGGTAGCGACACCTGAATGGCTGGAGCACAAACAGGTCTTGTACATATGACATAGGCCTGTTG
TGTTTCCTATGCCGTGCAACACCTCATGTTATGTTTACATAATGTAAAATTAGAGGGGAGTTTGCACATCTCACGTACTC
TTTGTATGGAATGGAAACTACTTTGTATAGTGGAGCCATAAGACATTATTGTCACCATCACTGTGTACCACCTGGTACTG
CAACTCACTGCTTTTTTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis