Browse Element(s) Details


OsAffx.5156.1.S1_at

Description tigr:9634.m04843
TID=OsAffx.5156.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=benzoyl coenzyme A: benzyl alcohol benzoyl transferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4966011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49620OsAffx.15999.1.S1_at11/116+30027722..30028111expressed protein
LOC_Os06g49629NANA6+30032716..30032851NA
LOC_Os06g49640Os.27756.1.S1_at11/116+30033723..30036731INTEGRAL MEMBRANE PROTEIN, putative, expressed
LOC_Os06g49640OsAffx.28191.1.S1_at11/116+30033723..30036731INTEGRAL MEMBRANE PROTEIN, putative, expressed
LOC_Os06g49650Os.51281.1.S1_at11/116+30037572..30038578Harpin-induced protein 1 containing protein, expressed
LOC_Os06g49660OsAffx.5156.1.S1_at11/116+30050930..30052339Transferase family protein, expressed
LOC_Os06g49670Os.51725.1.S1_at11/116+30058825..30062001pentatricopeptide, putative, expressed
LOC_Os06g49680Os.53567.1.S1_at11/116+30063112..30064315expressed protein
LOC_Os06g49680OsAffx.17155.1.S1_x_at1/116+30063112..30064315expressed protein
LOC_Os06g49690Os.51615.1.S1_at10/116+30065047..30065845expressed protein
LOC_Os06g49700Os.7854.1.S1_at11/116+30068673..30072758expressed protein
LOC_Os06g49700Os.7854.1.S2_at11/116+30068673..30072758expressed protein
LOC_Os06g49710Os.55761.1.S1_at11/116+30073602..30074500expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5156.1.S1_at--1125--10631Chr06:30051316..30051340 (25 bp)
TTCGCCTACTCCGTTGCGGCGACGA
LOC_Os06g49660
OsAffx.5156.1.S1_at--779--1131Chr06:30051231..30051255 (25 bp)
AGTCGGCGGTGACGTACGAGTACCT
LOC_Os06g49660
OsAffx.5156.1.S1_at--462--1771Chr06:30051192..30051216 (25 bp)
ACCTGATGGTGGTCGCCGGGCGGCC
LOC_Os06g49660
OsAffx.5156.1.S1_at--118--8811Chr06:30051165..30051189 (25 bp)
TGTTCGCGCTGTCGCGGACGTACAT
LOC_Os06g49660
OsAffx.5156.1.S1_at--684--8711Chr06:30051156..30051180 (25 bp)
TGTCGCGGACGTACATCGTCTCCGA
LOC_Os06g49660
OsAffx.5156.1.S1_at--287--8111Chr06:30051150..30051174 (25 bp)
GGACGTACATCGTCTCCGACGTGAG
LOC_Os06g49660
OsAffx.5156.1.S1_at--132--4211Chr06:30051135..30051159 (25 bp)
CCGACGTGAGCCACGCCGGGTTCAA
LOC_Os06g49660
OsAffx.5156.1.S1_at--1014--1811Chr06:30051123..30051147 (25 bp)
ACGCCGGGTTCAAGAGCGTCGACTT
LOC_Os06g49660
OsAffx.5156.1.S1_at--478--2531Chr06:30051031..30051055 (25 bp)
AACTACTTCTCGAGGTCCAAGAATG
LOC_Os06g49660
OsAffx.5156.1.S1_at--531--10571Chr06:30051025..30051049 (25 bp)
TTCTCGAGGTCCAAGAATGGCAAGG
LOC_Os06g49660
OsAffx.5156.1.S1_at--847--7291Chr06:30050983..30051007 (25 bp)
GTGCCCATCTGCTTGCCCAAGGACG
LOC_Os06g49660
Target Sequence 
TTCGCCTACTCCGTTGCGGCGACGACCGCCGGCGAGCTCTGCGGCGGCGACCTCGGGTACGCGCTGGGGCTGGTGAAGAA
GGCCAAGTCGGCGGTGACGTACGAGTACCTGCAGTCGGTGGCGGACCTGATGGTGGTCGCCGGGCGGCCGCTGTTCGCGC
TGTCGCGGACGTACATCGTCTCCGACGTGAGCCACGCCGGGTTCAAGAGCGTCGACTTCGGGTGGGGGGAGGCCGTCTAC
GGCGGTCCGGCGAAGGGCGGCGAAGGGCCGCTCCTCGGCGTCACCAACTACTTCTCGAGGTCCAAGAATGGCAAGGGCGA
GCAGAGCGTCGTCGTGCCCATCTGCTTGCCCAAGGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis