Browse Element(s) Details


Os.54614.1.S1_at

Description gb:AK106249.1
DB_XREF= gi:32991458
TID=Os.54614.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54614 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-D11, full insert sequence.
FL= gb:AK106249.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0532011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05250Os.10307.1.S1_at11/116+2365603..2371092GTP-binding protein lepA, putative, expressed
LOC_Os06g05260Os.53028.1.S1_at11/116+2371993..2373947Pectate lyase precursor, putative, expressed
LOC_Os06g05260Os.1741.4.S1_x_at1/116+2371993..2373947Pectate lyase precursor, putative, expressed
LOC_Os06g05272Os.5708.1.S1_at9/116+2377130..2378274Pectate lyase precursor, putative
LOC_Os06g05272OsAffx.18481.1.S1_x_at1/116+2377130..2378274Pectate lyase precursor, putative
LOC_Os06g05284Os.5951.1.S1_at11/116+2379596..2381937Transferase family protein, expressed
LOC_Os06g05300OsAffx.27462.1.S1_at11/116+2383314..2385241Transferase family protein
LOC_Os06g05310OsAffx.27463.1.S1_x_at11/116+2386399..2389053Transferase family protein, expressed
LOC_Os06g05310OsAffx.10727.1.S1_x_at1/116+2386399..2389053Transferase family protein, expressed
LOC_Os06g05320Os.54614.1.S1_at11/116+2393822..2395563Transferase family protein, expressed
LOC_Os06g05320OsAffx.27463.1.S1_x_at2/116+2393822..2395563Transferase family protein, expressed
LOC_Os06g05330OsAffx.28190.1.S1_at3/116+2397357..2397813hypothetical protein
LOC_Os06g05340OsAffx.4729.1.S1_x_at11/116+2398692..2401591activator of sporamin LUC 1, putative
LOC_Os06g05340OsAffx.4729.1.S1_at11/116+2398692..2401591activator of sporamin LUC 1, putative
LOC_Os06g05350Os.8272.1.S1_s_at11/116+2404458..2407318DNA-binding protein p24, putative, expressed
LOC_Os06g05359Os.50271.1.S1_at11/116+2409177..2417569NB-ARC domain containing protein, expressed
LOC_Os06g05359Os.41415.1.S1_at1/116+2409177..2417569NB-ARC domain containing protein, expressed
LOC_Os06g05368Os.27107.1.S1_at11/116+2417706..2421486expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54614.1.S1_at--775--9051Chr06:2394982..2395006 (25 bp)
TGCATCGCCATAGCAATCGCCAGGG
LOC_Os06g05320
Os.54614.1.S1_at--445--3891Chr06:2395128..2395152 (25 bp)
CTGGGCCGAGCGTCTTGCCGCGATC
LOC_Os06g05320
Os.54614.1.S1_at--706--8591Chr06:2395244..2395268 (25 bp)
TGGTCACCGTGTACGGCAACGAGCT
LOC_Os06g05320
Os.54614.1.S1_at--137--8631Chr06:2395370..2395394 (25 bp)
TGGTGGCGTGTCCAAACTCAACAGT
LOC_Os06g05320
Os.54614.1.S1_at--1015--8691Chr06:2395378..2395402 (25 bp)
TGTCCAAACTCAACAGTGTCGCGGT
LOC_Os06g05320
Os.54614.1.S1_at--344--2131Chr06:2395390..2395414 (25 bp)
ACAGTGTCGCGGTCCCGCCATCATT
LOC_Os06g05320
Os.54614.1.S1_at--337--10791Chr06:2395413..2395437 (25 bp)
TTGATCAGTGCAAACTGTGCGGAAT
LOC_Os06g05320
Os.54614.1.S1_at--262--5131Chr06:2395422..2395446 (25 bp)
GCAAACTGTGCGGAATGGAGACTAG
LOC_Os06g05320
Os.54614.1.S1_at--339--2971Chr06:2395435..2395459 (25 bp)
AATGGAGACTAGTACTGGCCTTGAA
LOC_Os06g05320
Os.54614.1.S1_at--1150--2011Chr06:2395442..2395466 (25 bp)
ACTAGTACTGGCCTTGAATTGGACA
LOC_Os06g05320
Os.54614.1.S1_at--1146--4291Chr06:2395453..2395477 (25 bp)
CCTTGAATTGGACACTTAGGTAGTG
LOC_Os06g05320
Target Sequence 
TGCATCGCCATAGCAATCGCCAGGGCCAGCGCCGGCGAGCTGCTCGACGACGACGGACTAGCCGGGCTCGCGCGCGCCGC
CGCGGCGATCCAGGCGGCGATCCGGGACGAGCTGGAGCTGGAGGACCCGGTGGGCGGCGCGGAGCGCTGGGCCGAGCGTC
TTGCCGCGATCCCCAGGGGGAGGCTCACGGCGGCGGGGTCGTCGCACCGGTTCATGGCGTACGAGACGGACTTCGGGTGG
GGCGCGCCGAGCCGCGTCGAGCTGGTCACCGTGTACGGCAACGAGCTGGTGGCGATGCTCGGCGGCGCGGCGGACGGCGG
CGTGCAGGTGTCGGTGGTGCTCGGGCGCGCGCTCATGGACGCGTTCGCGGACAACTTCCGGCGGCAGGTGGTGGCGTGTC
CAAACTCAACAGTGTCGCGGTCCCGCCATCATTGATCAGTGCAAACTGTGCGGAATGGAGACTAGTACTGGCCTTGAATT
GGACACTTAGGTAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54614.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis