Browse Element(s) Details


OsAffx.27463.1.S1_x_at

Description tigr:9634.m00453
TID=OsAffx.27463.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transferase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0531011/11Transferase family protein, expressed
LOC_Os06g053202/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05240Os.47859.1.S1_at10/116+2357441..2364099Zinc carboxypeptidase family protein, expressed
LOC_Os06g05250Os.10307.1.S1_at11/116+2365603..2371092GTP-binding protein lepA, putative, expressed
LOC_Os06g05260Os.53028.1.S1_at11/116+2371993..2373947Pectate lyase precursor, putative, expressed
LOC_Os06g05260Os.1741.4.S1_x_at1/116+2371993..2373947Pectate lyase precursor, putative, expressed
LOC_Os06g05272Os.5708.1.S1_at9/116+2377130..2378274Pectate lyase precursor, putative
LOC_Os06g05272OsAffx.18481.1.S1_x_at1/116+2377130..2378274Pectate lyase precursor, putative
LOC_Os06g05284Os.5951.1.S1_at11/116+2379596..2381937Transferase family protein, expressed
LOC_Os06g05300OsAffx.27462.1.S1_at11/116+2383314..2385241Transferase family protein
LOC_Os06g05310OsAffx.27463.1.S1_x_at11/116+2386399..2389053Transferase family protein, expressed
LOC_Os06g05310OsAffx.10727.1.S1_x_at1/116+2386399..2389053Transferase family protein, expressed
LOC_Os06g05320Os.54614.1.S1_at11/116+2393822..2395563Transferase family protein, expressed
LOC_Os06g05320OsAffx.27463.1.S1_x_at2/116+2393822..2395563Transferase family protein, expressed
LOC_Os06g05330OsAffx.28190.1.S1_at3/116+2397357..2397813hypothetical protein
LOC_Os06g05340OsAffx.4729.1.S1_x_at11/116+2398692..2401591activator of sporamin LUC 1, putative
LOC_Os06g05340OsAffx.4729.1.S1_at11/116+2398692..2401591activator of sporamin LUC 1, putative
LOC_Os06g05350Os.8272.1.S1_s_at11/116+2404458..2407318DNA-binding protein p24, putative, expressed
LOC_Os06g05359Os.50271.1.S1_at11/116+2409177..2417569NB-ARC domain containing protein, expressed
LOC_Os06g05359Os.41415.1.S1_at1/116+2409177..2417569NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27463.1.S1_x_at--816--8532Chr06:2394856..2394880 (25 bp)
TGGACGTCCATCGTGCGCGCCAAGT
LOC_Os06g05320
OsAffx.27463.1.S1_x_at--699--8531Chr06:2388557..2388581 (25 bp)
TGGACGCCGCCGACAAGGTCTACTT
LOC_Os06g05310
OsAffx.27463.1.S1_x_at--854--4511Chr06:2388565..2388589 (25 bp)
GCCGACAAGGTCTACTTCATGGTGA
LOC_Os06g05310
OsAffx.27463.1.S1_x_at--435--9892Chr06:2394913..2394937 (25 bp)
TACTTCATGGTGAGCGCGGACTGCC
LOC_Os06g05320
OsAffx.27463.1.S1_x_at--594--9891Chr06:2388634..2388658 (25 bp)
TACTTCGGCAACTGCGTCACCACAT
LOC_Os06g05310
OsAffx.27463.1.S1_x_at--336--9151Chr06:2388646..2388670 (25 bp)
TGCGTCACCACATGCGTCGCCAAGG
LOC_Os06g05310
OsAffx.27463.1.S1_x_at--207--9291Chr06:2388697..2388721 (25 bp)
TCCGACGACGGACTAGCCGGTCTCG
LOC_Os06g05310
OsAffx.27463.1.S1_x_at--835--9451Chr06:2388762..2388786 (25 bp)
TCTGGAGGTCCCGTTCGGCAACTCG
LOC_Os06g05310
OsAffx.27463.1.S1_x_at--796--10611Chr06:2388775..2388799 (25 bp)
TTCGGCAACTCGGAGCGCTGGCTCG
LOC_Os06g05310
OsAffx.27463.1.S1_x_at--725--9351Chr06:2388853..2388877 (25 bp)
TCGCACCGGTACATGGCGTACGAGA
LOC_Os06g05310
OsAffx.27463.1.S1_x_at--1046--4151Chr06:2388991..2389015 (25 bp)
CGCCGCGCGCTCATGGATGCGTTCG
LOC_Os06g05310
Target Sequence 
TGGACGTCCATCGTGCGCGCCAAGTCCCTGGACGCCGCCGACAAGGTCTACTTCATGGTGAGCGCGGACTGCCGGCGCCG
GCTGCGCCCGCCGGCCGACAAGGGCTACTTCGGCAACTGCGTCACCACATGCGTCGCCAAGGCCATCTCCGGCGACCTGT
CGGCCGGCTCCGACGACGGACTAGCCGGTCTCGCGCGCGCCGCCGCGGCGATCCAGAGGGCGATCCGGGAGGGTCTGGAG
GTCCCGTTCGGCAACTCGGAGCGCTGGCTCGACGGCGCCACGGCGACGACCCCGCCGGTGAGGTCGTTCACGAGGTCGGG
GTCGTCGCACCGGTACATGGCGTACGAGACGGACTTCGGGTGGGGCGCGCCGAGCCGCGCCGAGCTGGCCACCGTGTACG
GCGAGGAGGTGGTGATGATGCTGGGCGCGGCGGACGGCGGCGTGCAGGTGTCAGTGGTGCTCCGCCGCGCGCTCATGGAT
GCGTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27463.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis