Browse Element(s) Details


Os.10307.1.S1_at

Description gb:AK103630.1
DB_XREF= gi:32988839
TID=Os.10307.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10307 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033133P12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133P12, full insert sequence.
FL= gb:AK103630.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0525011/11GTP-binding protein lepA, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05220OsAffx.4728.1.S1_at11/116+2339925..2341658hypothetical protein
LOC_Os06g05230OsAffx.8876.1.S1_at1/116+2342538..2348554retrotransposon protein, putative, unclassified
LOC_Os06g05240Os.47859.1.S1_at10/116+2357441..2364099Zinc carboxypeptidase family protein, expressed
LOC_Os06g05250Os.10307.1.S1_at11/116+2365603..2371092GTP-binding protein lepA, putative, expressed
LOC_Os06g05260Os.53028.1.S1_at11/116+2371993..2373947Pectate lyase precursor, putative, expressed
LOC_Os06g05260Os.1741.4.S1_x_at1/116+2371993..2373947Pectate lyase precursor, putative, expressed
LOC_Os06g05272Os.5708.1.S1_at9/116+2377130..2378274Pectate lyase precursor, putative
LOC_Os06g05272OsAffx.18481.1.S1_x_at1/116+2377130..2378274Pectate lyase precursor, putative
LOC_Os06g05284Os.5951.1.S1_at11/116+2379596..2381937Transferase family protein, expressed
LOC_Os06g05300OsAffx.27462.1.S1_at11/116+2383314..2385241Transferase family protein
LOC_Os06g05310OsAffx.27463.1.S1_x_at11/116+2386399..2389053Transferase family protein, expressed
LOC_Os06g05310OsAffx.10727.1.S1_x_at1/116+2386399..2389053Transferase family protein, expressed
LOC_Os06g05320Os.54614.1.S1_at11/116+2393822..2395563Transferase family protein, expressed
LOC_Os06g05320OsAffx.27463.1.S1_x_at2/116+2393822..2395563Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0003746molecular_functiontranslation elongation factor activity
GO:0005525molecular_functionGTP binding
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10307.1.S1_at--649--6931Chr06:2366243..2366267 (25 bp)
GTAGGGTCCGTTGATATTCCTCAAG
LOC_Os06g05250
Os.10307.1.S1_at--100--3891Chr06:2366174..2366198 (25 bp)
CTGTGCTTAGTGCTGTAGCTGTCTA
LOC_Os06g05250
Os.10307.1.S1_at--365--8131Chr06:2366105..2366129 (25 bp)
GGACTTCTAGTCATCTTCTGAAAGG
LOC_Os06g05250
Os.10307.1.S1_at--677--5571Chr06:2365998..2366019 (22 bp)
GAAAGGTGCCTTTTGGTCTAATGAG
LOC_Os06g05250
Os.10307.1.S1_at--75--5631Chr06:2365942..2365966 (25 bp)
GACAAAGCACCATTTTGCCATCTTT
LOC_Os06g05250
Os.10307.1.S1_at--909--1552Chr06:15056773..15056797 (24 bp)
AGCTAGCATTACCTTTTGTTTTTCA
NONE
Os.10307.1.S1_at--49--2151Chr06:2365849..2365873 (25 bp)
ACAGAATTCGGTGATGCCTGCTGAA
LOC_Os06g05250
Os.10307.1.S1_at--151--5091Chr06:2365827..2365851 (25 bp)
GAATCAGCAGTAGCGTCGGCTTACC
LOC_Os06g05250
Os.10307.1.S1_at--438--10471Chr06:2365807..2365831 (25 bp)
TTACCCTTCTGATTCCTTAATTGGC
LOC_Os06g05250
Os.10307.1.S1_at--67--5931Chr06:2365656..2365680 (25 bp)
GAGCTTCTCTAGTTCTGTTTAATGC
LOC_Os06g05250
Os.10307.1.S1_at--742--3131Chr06:2365623..2365647 (25 bp)
AATTTTGTAACTCTTCTGCTGCATG
LOC_Os06g05250
Target Sequence 
GTAGGGTCCGTTGATATTCCTCAAGAAGCATTTCATGAGCTATTAAAGGTCTCCAATTCAAAATAGATGCTGTGCTTAGT
GCTGTAGCTGTCTAACAGCATGAGGGTGTGTTGTGGTGAAACACAAACAGCATGTTCTGGACTTCTAGTCATCTTCTGAA
AGGTGCCTTTTGGTCTAATGAGTACATAATGATGTTTCTTAATGATAAGAGGAGACAAAGCACCATTTTGCCATCTTTTG
CTGTGGCAACATATTTTCATGTTGAGAAGCTAGCATTACCTTTTGTTTTTCATTGATTTTCACTGTACAGAATTCGGTGA
TGCCTGCTGAATCAGCAGTAGCGTCGGCTTACCCTTCTGATTCCTTAATTGGCACAGCCATTTAGCTGAATCTCATTTCT
TTGTTCAAATTATGTTAAGAACTTTTTGGGAGGAAAATATTCCAGAGATAGTAAGTCCTTTTTTTTTGGGCAATGTTAAA
TAATTGGGTATTTCCCTTTGAGCTTCTCTAGTTCTGTTTAATGCAATTTTGTAATTTTGTAACTCTTCTGCTGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis