Browse Element(s) Details


OsAffx.4728.1.S1_at

Description tigr:9634.m00444
TID=OsAffx.4728.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0522011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05180Os.46583.1.S1_s_at11/116+2319822..2328652Coatomer beta subunit, putative, expressed
LOC_Os06g05180Os.46583.2.S1_at8/116+2319822..2328652Coatomer beta subunit, putative, expressed
LOC_Os06g05190Os.5200.1.S1_at11/116+2328884..2333422DNA repair protein XRCC1, putative, expressed
LOC_Os06g05200OsAffx.27461.1.S1_at11/116+2334681..2335298Zinc finger, C3HC4 type family protein
LOC_Os06g05200OsAffx.30568.1.S1_at1/116+2334681..2335298Zinc finger, C3HC4 type family protein
LOC_Os06g05209Os.5708.1.S1_at11/116+2335433..2337189Pectate lyase precursor, putative, expressed
LOC_Os06g05209OsAffx.18481.1.S1_x_at1/116+2335433..2337189Pectate lyase precursor, putative, expressed
LOC_Os06g05220OsAffx.4728.1.S1_at11/116+2339925..2341658hypothetical protein
LOC_Os06g05230OsAffx.8876.1.S1_at1/116+2342538..2348554retrotransposon protein, putative, unclassified
LOC_Os06g05240Os.47859.1.S1_at10/116+2357441..2364099Zinc carboxypeptidase family protein, expressed
LOC_Os06g05250Os.10307.1.S1_at11/116+2365603..2371092GTP-binding protein lepA, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4728.1.S1_at--431--2591Chr06:2340039..2340063 (25 bp)
AACGATGGATGGTCCGGCTCATCAG
LOC_Os06g05220
OsAffx.4728.1.S1_at--497--1411Chr06:2340562..2340586 (25 bp)
AGAAATGGGCCGTACCATGGTGCTC
LOC_Os06g05220
OsAffx.4728.1.S1_at--235--1031Chr06:2340608..2340632 (25 bp)
AGGTAGACGTGCAGCCTCGCGAGTT
LOC_Os06g05220
OsAffx.4728.1.S1_at--741--5471Chr06:2340639..2340663 (25 bp)
GAACTACATCATGGTCGGCTACACG
LOC_Os06g05220
OsAffx.4728.1.S1_at--9--2131Chr06:2340677..2340701 (25 bp)
ACAGGCCTTATCCAAGTTCTGATCC
LOC_Os06g05220
OsAffx.4728.1.S1_at--832--6711Chr06:2340692..2340716 (25 bp)
GTTCTGATCCACCAAAAACTCTTGC
LOC_Os06g05220
OsAffx.4728.1.S1_at--449--2391Chr06:2340707..2340731 (25 bp)
AAACTCTTGCCAACCAGATTGTGGT
LOC_Os06g05220
OsAffx.4728.1.S1_at--839--6591Chr06:2340723..2340895 (25 bp)
GATTGTGGTTGGACTCGTGAACGAC
LOC_Os06g05220
OsAffx.4728.1.S1_at--957--7511Chr06:2341174..2341198 (25 bp)
GTGGAGCTCAGACCAACTGTTTCAA
LOC_Os06g05220
OsAffx.4728.1.S1_at--458--6251Chr06:2341209..2341233 (25 bp)
GATGGTTTCCATCTTCAGAACAGCT
LOC_Os06g05220
OsAffx.4728.1.S1_at--870--7371Chr06:2341296..2341316 (21 bp)
GTGACGCTTAGCATCCACAGAATCA
LOC_Os06g05220
Target Sequence 
AACGATGGATGGTCCGGCTCATCAGGCACATTAGAGGTGGCTGGTGCTTACGGCAGAAATGGGCCGTACCATGGTGCTCG
GGCAGATGTACCAAACTGGAAGGTAGACGTGCAGCCTCGCGAGTTCTCCATGAACTACATCATGGTCGGCTACACGCTCG
ACAAGGATTACAGGCCTTATCCAAGTTCTGATCCACCAAAAACTCTTGCCAACCAGATTGTGGTTGGACTCGTGAACGAC
AGTGGAGCTCAGACCAACTGTTTCAACCTGGACTGCGATGGTTTCCATCTTCAGAACAGCTCCTTCGCTCTGGGCTCCTC
CTGGAGCGACTCACTGTCGCAGCATGGAGGCGAAAGATACGGCGTGACGCTTAGCATCCACAGAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4728.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis