Browse Element(s) Details


OsAffx.27461.1.S1_at

Description tigr:9634.m00442
TID=OsAffx.27461.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0520011/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05169NANA6+2310288..2310656NA
LOC_Os06g05180Os.46583.1.S1_s_at11/116+2319822..2328652Coatomer beta subunit, putative, expressed
LOC_Os06g05180Os.46583.2.S1_at8/116+2319822..2328652Coatomer beta subunit, putative, expressed
LOC_Os06g05190Os.5200.1.S1_at11/116+2328884..2333422DNA repair protein XRCC1, putative, expressed
LOC_Os06g05200OsAffx.27461.1.S1_at11/116+2334681..2335298Zinc finger, C3HC4 type family protein
LOC_Os06g05200OsAffx.30568.1.S1_at1/116+2334681..2335298Zinc finger, C3HC4 type family protein
LOC_Os06g05209Os.5708.1.S1_at11/116+2335433..2337189Pectate lyase precursor, putative, expressed
LOC_Os06g05209OsAffx.18481.1.S1_x_at1/116+2335433..2337189Pectate lyase precursor, putative, expressed
LOC_Os06g05220OsAffx.4728.1.S1_at11/116+2339925..2341658hypothetical protein
LOC_Os06g05230OsAffx.8876.1.S1_at1/116+2342538..2348554retrotransposon protein, putative, unclassified
LOC_Os06g05240Os.47859.1.S1_at10/116+2357441..2364099Zinc carboxypeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27461.1.S1_at--733--8371Chr06:2335143..2335167 (25 bp)
GGCGATCGCCGAGTTGCTAGACCAG
LOC_Os06g05200
OsAffx.27461.1.S1_at--900--1191Chr06:2335132..2335156 (25 bp)
AGTTGCTAGACCAGGCCCGTTCCTA
LOC_Os06g05200
OsAffx.27461.1.S1_at--151--10651Chr06:2335103..2335127 (25 bp)
TTCGCGGACCTTCAGTCACATGATC
LOC_Os06g05200
OsAffx.27461.1.S1_at--412--4091Chr06:2335044..2335068 (25 bp)
CGACGACAATGTATCCGGGCTGATG
LOC_Os06g05200
OsAffx.27461.1.S1_at--181--751Chr06:2335036..2335060 (25 bp)
ATGTATCCGGGCTGATGATGGCGAT
LOC_Os06g05200
OsAffx.27461.1.S1_at--1024--5711Chr06:2334968..2334992 (25 bp)
GACTGCCCGATATGCCTGAACAACG
LOC_Os06g05200
OsAffx.27461.1.S1_at--723--1591Chr06:2334851..2334875 (25 bp)
AGCTGCCCGATGTGCCGGCGAGACA
LOC_Os06g05200
OsAffx.27461.1.S1_at--251--251Chr06:2334793..2334817 (25 bp)
ATATCCGGGCCTTGTACGGCGACGA
LOC_Os06g05200
OsAffx.27461.1.S1_at--267--1611Chr06:2334748..2334772 (25 bp)
AGCTGCTCGAGGACGGTCTCCGGCA
LOC_Os06g05200
OsAffx.27461.1.S1_at--535--7171Chr06:2334733..2334757 (25 bp)
GTCTCCGGCAGCTCGAGATTAGCAG
LOC_Os06g05200
OsAffx.27461.1.S1_at--1127--9371Chr06:2334721..2334745 (25 bp)
TCGAGATTAGCAGCTCGATCGCCGG
LOC_Os06g05200
Target Sequence 
GGCGATCGCCGAGTTGCTAGACCAGGCCCGTTCCTACAGCTTCGCGGACCTTCAGTCACATGATCCGCCGGCGGCGGCGG
CGGCGGCCGTCAACGACGACGACGACAATGTATCCGGGCTGATGATGGCGATGATGAAGACGGTGGATGCGCCGGCCGGC
GGCGGCGACGGCGGCGACTGCCCGATATGCCTGAACAACGGCGGCGGCGAGGAGTGGAAGGAGACGGCGTGCGGGCACCG
GTTCCACGCGCGGTGCGTGGCGAGGTGGGCGCGGGTGGGGAGGAAGGGGATGAGCTGCCCGATGTGCCGGCGAGACATGA
TGTCGCCGGCGGTGGACTTGCTGGTGAGGGATATCCGGGCCTTGTACGGCGACGAGGAGCTTAGTGATGTGCGCGAGCTG
CTCGAGGACGGTCTCCGGCAGCTCGAGATTAGCAGCTCGATCGCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27461.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis