Browse Element(s) Details


Os.5200.1.S1_at

Description gb:AK068998.1
DB_XREF= gi:32979022
TID=Os.5200.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5200 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023001F16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001F16, full insert sequence.
FL= gb:AK068998.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0519011/11DNA repair protein XRCC1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05169NANA6+2310288..2310656NA
LOC_Os06g05180Os.46583.1.S1_s_at11/116+2319822..2328652Coatomer beta subunit, putative, expressed
LOC_Os06g05180Os.46583.2.S1_at8/116+2319822..2328652Coatomer beta subunit, putative, expressed
LOC_Os06g05190Os.5200.1.S1_at11/116+2328884..2333422DNA repair protein XRCC1, putative, expressed
LOC_Os06g05200OsAffx.27461.1.S1_at11/116+2334681..2335298Zinc finger, C3HC4 type family protein
LOC_Os06g05200OsAffx.30568.1.S1_at1/116+2334681..2335298Zinc finger, C3HC4 type family protein
LOC_Os06g05209Os.5708.1.S1_at11/116+2335433..2337189Pectate lyase precursor, putative, expressed
LOC_Os06g05209OsAffx.18481.1.S1_x_at1/116+2335433..2337189Pectate lyase precursor, putative, expressed
LOC_Os06g05220OsAffx.4728.1.S1_at11/116+2339925..2341658hypothetical protein
LOC_Os06g05230OsAffx.8876.1.S1_at1/116+2342538..2348554retrotransposon protein, putative, unclassified
LOC_Os06g05240Os.47859.1.S1_at10/116+2357441..2364099Zinc carboxypeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0005622cellular_componentintracellular
GO:0003713molecular_functiontranscription coactivator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5200.1.S1_at--821--6351Chr06:2332646..2332670 (25 bp)
GATGCCATAGAATCTCTCAAGCAAG
LOC_Os06g05190
Os.5200.1.S1_at--500--4751Chr06:2333132..2333156 (25 bp)
GCTGAGTTTGCCCACATGCATGATA
LOC_Os06g05190
Os.5200.1.S1_at--609--2731Chr06:2333162..2333186 (25 bp)
AAGAAGCATCAGAGCAAGCCTAGAT
LOC_Os06g05190
Os.5200.1.S1_at--398--8871Chr06:2333209..2333233 (25 bp)
TGATGACACCATCGAAATGACGGAA
LOC_Os06g05190
Os.5200.1.S1_at--1116--6591Chr06:2333239..2333263 (25 bp)
GATTGATCTCGCATGCAGGCAACTC
LOC_Os06g05190
Os.5200.1.S1_at--1047--6191Chr06:2333278..2333302 (25 bp)
GAGGCAGTAGTTTTAGGTCCGTTCT
LOC_Os06g05190
Os.5200.1.S1_at--720--6811Chr06:2333287..2333311 (25 bp)
GTTTTAGGTCCGTTCTTCAGAAGAT
LOC_Os06g05190
Os.5200.1.S1_at--779--5231Chr06:2333319..2333343 (25 bp)
GAATACTGAATATCCATCTTTCCCA
LOC_Os06g05190
Os.5200.1.S1_at--550--9551Chr06:2333335..2333359 (25 bp)
TCTTTCCCAATGGTGTATGTGTCTG
LOC_Os06g05190
Os.5200.1.S1_at--644--7451Chr06:2333353..2333377 (25 bp)
GTGTCTGGGATCTGGATAGCTGCAT
LOC_Os06g05190
Os.5200.1.S1_at--487--7951Chr06:2333366..2333390 (25 bp)
GGATAGCTGCATGTGTAAACTGAAC
LOC_Os06g05190
Target Sequence 
GATGCCATAGAATCTCTCAAGCAAGGGAATGATGTCAAGGGAGTGGCGGAGCAGTGGAGCTTTGTCCCCCATGTCATCAA
TGAACTGGCGGNAACTTGATGGAAGAAGAAAAGAGGGATCGTTATCGAAAGAACAACTCTCCCNGNTAGCAATCAAATGC
AAAAAGATTTATCAGGCTGAGTTTGCCCACATGCATGATAATGACAAGAAGCATCAGAGCAAGCCTAGATCAGATGATGC
TCAGTATGACAGTGATGACACCATCGAAATGACGGAAGAAGAGATTGATCTCGCATGCAGGCAACTCCCTGGGGTATGCG
GGAGGCAGTAGTTTTAGGTCCGTTCTTCAGAAGATGCAGTAAGAATACTGAATATCCATCTTTCCCAATGGTGTATGTGT
CTGGGATCTGGATAGCTGCATGTGTAAACTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5200.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis