Browse Element(s) Details


Os.46583.1.S1_s_at

Description gb:AK111584.1
DB_XREF= gi:37988247
TID=Os.46583.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46583 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-042-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089O14, full insert sequence.
FL= gb:AK111584.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0518011/11Coatomer beta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05160Os.27076.1.S1_at10/116+2291601..2297802sulfate transporter 3.4, putative, expressed
LOC_Os06g05169NANA6+2310288..2310656NA
LOC_Os06g05180Os.46583.1.S1_s_at11/116+2319822..2328652Coatomer beta subunit, putative, expressed
LOC_Os06g05180Os.46583.2.S1_at8/116+2319822..2328652Coatomer beta subunit, putative, expressed
LOC_Os06g05190Os.5200.1.S1_at11/116+2328884..2333422DNA repair protein XRCC1, putative, expressed
LOC_Os06g05200OsAffx.27461.1.S1_at11/116+2334681..2335298Zinc finger, C3HC4 type family protein
LOC_Os06g05200OsAffx.30568.1.S1_at1/116+2334681..2335298Zinc finger, C3HC4 type family protein
LOC_Os06g05209Os.5708.1.S1_at11/116+2335433..2337189Pectate lyase precursor, putative, expressed
LOC_Os06g05209OsAffx.18481.1.S1_x_at1/116+2335433..2337189Pectate lyase precursor, putative, expressed
LOC_Os06g05220OsAffx.4728.1.S1_at11/116+2339925..2341658hypothetical protein
LOC_Os06g05230OsAffx.8876.1.S1_at1/116+2342538..2348554retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0030126cellular_componentCOPI vesicle coat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46583.1.S1_s_at--642--5411Chr06:2320851..2320875 (25 bp)
GAAGCTGTCGAAGTTGATGCTGATG
LOC_Os06g05180
Os.46583.1.S1_s_at--418--5871Chr06:2320827..2320851 (25 bp)
GAGCCTGAAGAGACCGTTCTTGTAA
LOC_Os06g05180
Os.46583.1.S1_s_at--791--2891Chr06:2320303..2320327 (25 bp)
AAGGACCAAGGATGCTGTGCCGTTT
LOC_Os06g05180
Os.46583.1.S1_s_at--1008--6331Chr06:2320293..2320317 (25 bp)
GATGCTGTGCCGTTTTGCATTGGTG
LOC_Os06g05180
Os.46583.1.S1_s_at--409--3611Chr06:2320276..2320300 (25 bp)
CATTGGTGATGCTGTGCCGTTTGAG
LOC_Os06g05180
Os.46583.1.S1_s_at--466--7291Chr06:2320263..2320287 (25 bp)
GTGCCGTTTGAGCTTTGATCTTATC
LOC_Os06g05180
Os.46583.1.S1_s_at--144--6431Chr06:2320247..2320271 (25 bp)
GATCTTATCATATCCTTCAACTGAA
LOC_Os06g05180
Os.46583.1.S1_s_at--635--4291Chr06:2320234..2320258 (25 bp)
CCTTCAACTGAACTCCAAACTCAAG
LOC_Os06g05180
Os.46583.1.S1_s_at--489--5391Chr06:2320204..2320228 (25 bp)
GAAGCATGCTTGTCCAATGGTATCA
LOC_Os06g05180
Os.46583.1.S1_s_at--170--291Chr06:2320150..2320174 (25 bp)
ATAGGTGATTCTTTCGTCCTGCAAC
LOC_Os06g05180
Os.46583.1.S1_s_at--835--9551Chr06:2320141..2320165 (25 bp)
TCTTTCGTCCTGCAACATTTTCATA
LOC_Os06g05180
Target Sequence 
GAAGCTGTCGAAGTTGATGCTGATGAGCCTGAAGAGACCGTTCTTGTAAATGGGAAAGAGGGTGAGGAACAGTGGGTGCT
AACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGGTGATGCTGTGCCGTTTGAGCTTTGATCTTATCA
TATCCTTCAACTGAACTCCAAACTCAAGACATGGAAGCATGCTTGTCCAATGGTATCAATCCAGNNCGGCTTCTTTTTTG
CTGCAATATAGGTGATTCTTTCGTCCTGCAACATTTTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46583.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis